Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1247 ATGAACGATCTAATGACCAAGTCCTTCACCAGCTACGTGGATCTAAAGAAAGCTGCGATGAAAGACGTTGATTTGGAAGCGGGTATGGCTGTTCGTCCCGATGTGGAACTCACCTCTTCCATAACCCACTTGGACACTGACATGGGAATCTTCTTGGAAGAAGCTGAGAAGGTGAAGACTGAAATGGGATCTCTCAGAGACATCCTCGGCAGCTTGCAGCAGGCCAACGAGGAGAGCAAGTCTCTCCATAAGGCTGAGGAGCTCAAGGCACTAAGGAGCAGGATCAACACCAACATTGTTGCAGTCCTAAAGAAGGCCAGGACGATTCGGACCCAGCTCGAGGAGATGGACCGGGCCAACGCCGCCAACAGGAGGCTCTCCGGTCTCAAGGATGGCACGCCGGCAATCTACCGGACCCGGATCGCTGTCACCAATGGGCTGAGGAAGAAGCTGAAGGAGCTGATGATGGAGTTTCAGGGGTTGAGGCAGAGGATGATGAGTGAATACAAGGATACTGTGGGGAGAAGGTACTTCACAGTGACTGGGGAGTACCCAGATGAAGAGGTGATTGAGAAGATCATTGCAAATGGTAATGAGGAAGAGGTTTTAGGGAAGGCGATTCAGGAGCATGGGAGAGGGAAGGTCCTGGAAACTGTGGTGGAGATTCAGGATAGACATGATGCTGCTAAGGAAGTGGAGAAGAGTTTGCTGGAGCTGCACCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCATGTGTTGCACGCTTCGCACTATGTTAAGGATGGGACCAAGAATCTGCACACTGCAAAGCATTACCAGAAGAATAGCAGGAAGTGGATGTGTATTGGGATCATATTGCTGCTCATTCTTATTCTTGTTATTGTTATTCCAGTTGCCACCAGTTTAAGCAGTTCTTGA 954 0.499 MNDLMTKSFTSYVDLKKAAMKDVDLEAGMAVRPDVELTSSITHLDTDMGIFLEEAEKVKTEMGSLRDILGSLQQANEESKSLHKAEELKALRSRINTNIVAVLKKARTIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEYPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHTAKHYQKNSRKWMCIGIILLLILILVIVIPVATSLSSS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1247 317 CDD SynN 48 206 IPR006011 GO:0016020
Vra1g1247 317 Gene3D - 215 314 - -
Vra1g1247 317 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 219 281 IPR000727 -
Vra1g1247 317 Gene3D - 44 173 - -
Vra1g1247 317 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 310 - -
Vra1g1247 317 ProSitePatterns Syntaxin / epimorphin family signature. 225 265 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra1g1247 317 SUPERFAMILY t-snare proteins 46 274 IPR010989 GO:0016020|GO:0016192
Vra1g1247 317 SMART tSNARE_6 214 281 IPR000727 -
Vra1g1247 317 Pfam Syntaxin 51 254 IPR006011 GO:0016020
Vra1g1247 317 PANTHER SYNTAXIN 5 310 IPR045242 -
Vra1g1247 317 Coils Coil 144 164 - -
Vra1g1247 317 SMART SynN_4 43 170 IPR006011 GO:0016020
Vra1g1247 317 CDD SNARE_syntaxin1-like 218 278 - -
Vra1g1247 317 Pfam SNARE domain 256 307 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1247 Vra-Chr1 17441614 17442904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1247 1 317 SNARE and Associated Proteins AT1G08560 66.044 8.73e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1247 K08486 - gmx:100816016 542.732