Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1243 ATGGGAACTGCTTATGACCATGATTCTCCTCCTCTACTTGAAGACCTTAAGGTGACCATCCACAACTCCTCCATGATTTTCCCATCCAAAGAGATTGAGAAAAAGTCCTTGTTCTTGTCCAACATAGACAAGGTCCTCACCTTTGATGTCGAAACGGTTCACTTCTTCGGAGCCAACAAAGATTTTCCTCCGCATGTTGTCACTGAAATGCTGAAGAATGCCTTAGAGGATGCCCTTGTTGTTTATGACTTCTTGAGTGGAAGATTGAAGGTACACCCTGAAACCAAAAGGTTAGAGATGGATTCTACTCCAGAAGGGGCAGGCTTTGTGGTGGCTTCCAGTGAATACAAACTGGACCAGTTAGGGGATTTGGATTATCCAAACACAGCCTTTGCACAATTGGTTCACAAGAACAAGAATTTTCTTAAAGAGGGTGATGATCCACTGTGTGTTACCCAGATAACATCCTTCAAATGTGGTGGTTTTGCCATTGGTATTTCCACAAGCCACACTACCTTCGACGGCCTCAGTTTCAAGACCTTCCTTGACAACGTCGCTTCCATAGCCGCTAAAAAGCCCTTGGCCGTGACGCCGTGCCATGACAGGCACCTGCTGGCGGCACGATCCCCGCCAAGTGTCACCTTCCCACACCCGGAGATGCTGAAACTGAACGACCTCCCCAAGTCCAACATCTTCGAAGCTTCAACGGAAGAGCTTCACTTCAAGGTCTTCAAACTAACCTCAAACGACATCACGAAGCTGAAGGAAGAGGCGAGAAATTCAGTTGGTGGTGACAAAAGCACACGCATCACAGGCTTTAACGCTATCACCGCCCACATATGGAGATGCAAGGCACTGTCATGCGATGATGGTAGTAACCCTAATAGGTCATCAACGATTCTGTATGCTGTGGATATACGTTCGAGGTTGGAGCCTCCTTTGCCGAAATCTTACACGGGTAACGCAGTGTTAACGGCGTATGCCACAGCAACGTGTCGGGAGGTAGAAGAATGGCCGTTCATGAGGTTGGTTGAAACAGTGCGTGAGGGTGCAACAAGGATGACGAATGAGTACGCAAGGTCGATCATTGACTGGGGAGAGATGAACAAAGGGTTTCCAAATGGGGAGGTTTTGGTATCATCGTGGTGGAGATTAGGGTTTGAGAAGGTGGAGTTTCCATGGGGGAAGCCTAAGTATTGTTGTCCTGTGGTGTACCATAGGAAGGATATTGTTCTGTTATTTCCTCCCGTCGAGGGAGGAGGTGATGGGGTAAGTATTATTGTGGCTCTTCCTCCCAAGGATATGAACAAATTCCATGCACTCTTCAATAAGTTTTTGGGTGTTTGA 1347 0.4736 MGTAYDHDSPPLLEDLKVTIHNSSMIFPSKEIEKKSLFLSNIDKVLTFDVETVHFFGANKDFPPHVVTEMLKNALEDALVVYDFLSGRLKVHPETKRLEMDSTPEGAGFVVASSEYKLDQLGDLDYPNTAFAQLVHKNKNFLKEGDDPLCVTQITSFKCGGFAIGISTSHTTFDGLSFKTFLDNVASIAAKKPLAVTPCHDRHLLAARSPPSVTFPHPEMLKLNDLPKSNIFEASTEELHFKVFKLTSNDITKLKEEARNSVGGDKSTRITGFNAITAHIWRCKALSCDDGSNPNRSSTILYAVDIRSRLEPPLPKSYTGNAVLTAYATATCREVEEWPFMRLVETVREGATRMTNEYARSIIDWGEMNKGFPNGEVLVSSWWRLGFEKVEFPWGKPKYCCPVVYHRKDIVLLFPPVEGGGDGVSIIVALPPKDMNKFHALFNKFLGV* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1243 448 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 14 446 - -
Vra1g1243 448 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 14 446 - -
Vra1g1243 448 Gene3D - 14 221 IPR023213 -
Vra1g1243 448 Pfam Transferase family 16 440 - -
Vra1g1243 448 Gene3D - 227 445 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1243 Vra-Chr1 17281426 17286747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1243 16 446 Monolignol Biosynthesis Gene Families AT5G48930 30.921 2.70e-50 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1243 K13065 - gmx:100305576 772.311