Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1229 ATGGCGACGAGGTACTGGGTAGTGTCTCTCCCCGTTCCGAATTCCGCATCCACTCTGTGGAACAAATTGCAGGAAGAAATCTCCAAACACTCCTTCGACACACCTCTTTACAGATTCAACATTCCTAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGACGATCTCGTCAAGTCGAACAACTTCGTGGAGGGAGTGTCGCACAAGATCAGGCGACAGATTGATGATCTGGAAAGAGTGTCGGGCGCAGTGACCAGTAGTTTGACGGTGGATGGAGTCCCTGTTGATTCGTACTTGACGAGGTTTGCTTGGGATGAAGCCAGGTACCCGACTATGTCGCCGTTGAAGGAGACTGTGGATGGGATTCATGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATCCGCAGTCAGCTTAATACCATCAATAGAAAGCAAACTGGAAGCTTAGCTGTGCGTGATCTTTCCAACTTGGTAAAACCTGAGGATATTATAACATCAGAAAATTTAACTACCCTACTTGCTATTGTTCCAAAGTATTCACAGAAGGATTGGCTCTCAAGCTATGAAACATTGACCAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAAGATAACGAATATGCTCTTTATTCTGTAACACTATTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGAGAAAAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCTGAATCACACGAGAGTCGCAAGCAAGAGTTAGAGAAATTGATAGATGACCAGGAAAGTTTGAGGTCCTCTCTGTTGCAGTGGTGTTATGCTAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTACGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAATCTGAGAAGAAAGTACGCTCTATCCTTGAAGGGTTGAGCGACAGCACAAACAGTGGTTACTGGAAGACTGAGGATGATGGGGTTGGGATGGCTGGCCTTGTAGCAGGTGATGGTGATGCCCACCCTTACGTCTCGTTCACTATCAATCTTGTTTGA 1131 0.4536 MATRYWVVSLPVPNSASTLWNKLQEEISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNNFVEGVSHKIRRQIDDLERVSGAVTSSLTVDGVPVDSYLTRFAWDEARYPTMSPLKETVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNTINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYSVTLFSRVADNFRTSAREKGFQIRDFEYSPESHESRKQELEKLIDDQESLRSSLLQWCYASYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKSEKKVRSILEGLSDSTNSGYWKTEDDGVGMAGLVAGDGDAHPYVSFTINLV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1229 376 SUPERFAMILY Vacuolar ATP synthase subunit C 1 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vra1g1229 376 Gene3D - 163 251 - -
Vra1g1229 376 Gene3D - 41 312 - -
Vra1g1229 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vra1g1229 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 - -
Vra1g1229 376 Gene3D Vacuolar atp synthase subunit c; domain 1 7 334 - -
Vra1g1229 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vra1g1229 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 375 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1229 Vra-Chr1 16897548 16905879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1229 1 375 Primary Pumps ATPases(2) AT1G12840 80.800 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1229 K02148 - gmx:100803728 690.649