Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1226 ATGGCTCCTTCATACTCTGAAACTTTGGGGCGCCATTCTCTGATTCCGAGCTTTCTCTATTCCTGTCCCTCTCCGCCGCAGAAGAAGATTGAAGCTTCAAGCTTCGCGGTTCCTTCTCCCAGTGAGAAACGCAGAATAGAGATGTTTTCGCCGGCGTTCTACGGTGCTTGCACCATCGGAGGAATCCTCAGCTGTGGCCCCACGCACACCGCCGTCACGCCTCTTGACGTTGTCAAATGCAACATACAGATTGACCCTGTCAAGTACAAGAACACCAGCACAGGATTTGGAGTCATGTTTAAGGAGCAAGGACTGAGGGGTTTTTACCGCGGATGGGCACCTACCCTTGTTGGTTACGGCGCACAGGGTGCCTTCAAATATGGATTGTATGAGTACTTCAAGAAGTACTATTCTGACATAGCTGGTCCAGAGTATGCAACGAAGTACAAGACATTGATTTACCTAGCCGGTTCAGCATCTTCTGAGTTGATTGCTGATGTTGCTCTTTGCCCATTTGAGGCTGTGAAGGTCAGAGTTCAAACTCAGCCTGGCTTTGCTAGAGGCCTAGCTGATGGACTCCCAAAGTTAGTCAGAACTGAAGGTGTCTCAGGGCTGTACAAGGGAATTATGCCTCTGTGGGGAAGACAGGTTCCATATACAATGATGAAATTTGCTTCTTTTGAGAACATAGTTGAGATGATCTACAAGCATGTCATCTCCAAACCAAAATATGAATGCAGCAATTCCCAGCAACTAGGTGTGAGCATTGTCGGTGGATACATGGCTGGTATATTGTGTGCTGTCGTCTCCCATCCCGCTGATAATCTTGTCTCTTTCCTTAACAATTCCAAAGGGGCAAGCGTTGCTGATGCTGTAAAGAAGCTTGGACTATGGGGTATGTTTACCCGTGGTCTACCTCTTCGTATTCTTATGGTTGGAACTCTCACAGGAGCTCAATGGGGAATATATGATTCATTCAAAGTTTTTGTGGGGCTGCCAACCACTGGCGGTGTTGCTCCTGCTCTTCCTCCTCCTGCTGCTTAG 1044 0.4789 MAPSYSETLGRHSLIPSFLYSCPSPPQKKIEASSFAVPSPSEKRRIEMFSPAFYGACTIGGILSCGPTHTAVTPLDVVKCNIQIDPVKYKNTSTGFGVMFKEQGLRGFYRGWAPTLVGYGAQGAFKYGLYEYFKKYYSDIAGPEYATKYKTLIYLAGSASSELIADVALCPFEAVKVRVQTQPGFARGLADGLPKLVRTEGVSGLYKGIMPLWGRQVPYTMMKFASFENIVEMIYKHVISKPKYECSNSQQLGVSIVGGYMAGILCAVVSHPADNLVSFLNNSKGASVADAVKKLGLWGMFTRGLPLRILMVGTLTGAQWGIYDSFKVFVGLPTTGGVAPALPPPAA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1226 347 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 29 341 IPR044677 GO:0005315|GO:1990547
Vra1g1226 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 149 233 IPR018108 -
Vra1g1226 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 136 IPR018108 -
Vra1g1226 347 PANTHER PHOSPHATE CARRIER PROTEIN 29 341 - -
Vra1g1226 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 329 IPR018108 -
Vra1g1226 347 Pfam Mitochondrial carrier protein 152 237 IPR018108 -
Vra1g1226 347 Pfam Mitochondrial carrier protein 56 138 IPR018108 -
Vra1g1226 347 Gene3D Mitochondrial carrier domain 56 330 IPR023395 -
Vra1g1226 347 SUPERFAMILY Mitochondrial carrier 57 324 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1226 Vra-Chr1 16820272 16823628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1226 12 341 Chloroplast and Mitochondria Gene Families AT3G48850 68.376 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1226 K15102 - gmx:100804257 624.009