Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1223 ATGCAAGGAAAGAGTTCTCCCCCTCTTGATGAAGAGAAAAAAGAAGCTTTCAACTTTCCTATTCCTCTCACACCATCTCAAAATCCAAAGGAACAAGCTTCATCATCACCCTTTTCAAACTTTCTTATCACTACCAACCATCAAAACACCACCTTCTTCCCCACCCCACATGGTCAAATAACCACTTCTAAATTTATCAATACCCAAGATCCATCTCAAGCTACAAATCAAGGTAATGCTGATATTAGGAAAAGGCACTATAGAGGAGTTAGGCAAAGACCTTGGGGAAAATGGGCAGCTGAGATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCAATGGCCTATGATGTTGCTGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAGCGTGTTGCTGTGCCACCACCATCACCGGAAACCACCACTTCCATTTCTTCAGCTTCTGCACAACCCTCTTCCCTCACATCACCACCACCACCACCACTACATGTTGGTGGCGATCATCAAACTCTAGAAACATCAGAAGAAGCAGAAGGGTTTCCAAGTCTGATGGAGTATGCACGGTTGCTGAAATGTAGGGATGATGATGATTTCCAACGTGTTGCATTGGGGCTTTACCAGCACCATCCCAATGAGGATGTTATCTACGGTTCATCTCAGCCACCACCTGCGCCATTTTTTCTGTCTTCTTCATCTTCTTCTGCATTTGCATCTTCAACTTCTCAGGGTGATTATGGTTCTTCTGGTTTCTATAATCAAGGAGGGAGTGGTTTTGATGAAGGGAACAAGAGAGGATCATAG 846 0.4444 MQGKSSPPLDEEKKEAFNFPIPLTPSQNPKEQASSSPFSNFLITTNHQNTTFFPTPHGQITTSKFINTQDPSQATNQGNADIRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDVAALKFKGNKAKLNFPERVAVPPPSPETTTSISSASAQPSSLTSPPPPPLHVGGDHQTLETSEEAEGFPSLMEYARLLKCRDDDDFQRVALGLYQHHPNEDVIYGSSQPPPAPFFLSSSSSSAFASSTSQGDYGSSGFYNQGGSGFDEGNKRGS* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1223 281 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Vra1g1223 281 MobiDBLite consensus disorder prediction 230 281 - -
Vra1g1223 281 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Vra1g1223 281 MobiDBLite consensus disorder prediction 143 193 - -
Vra1g1223 281 MobiDBLite consensus disorder prediction 1 37 - -
Vra1g1223 281 MobiDBLite consensus disorder prediction 151 167 - -
Vra1g1223 281 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Vra1g1223 281 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Vra1g1223 281 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Vra1g1223 281 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Vra1g1223 281 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 51 265 - -
Vra1g1223 281 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Vra1g1223 281 MobiDBLite consensus disorder prediction 238 270 - -
Vra1g1223 281 MobiDBLite consensus disorder prediction 21 37 - -
Vra1g1223 281 PANTHER DNA-BINDING DOMAIN 51 265 IPR044808 GO:0003700|GO:0009873
Vra1g1223 281 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1223 Vra-Chr1 16663578 16665695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1223 67 148 AP2-EREBP Transcription Factor Family AT5G61890 77.647 9.30e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra1g1223 AP2 9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1223 - - gmx:100806383 272.707