Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1214 ATGGAAAACAACGTCAATGTCAATTCTAGCAGTGTTCCTCATAACGAGGACAACATCAACACTGGCGAAACCATTCAGTTGCCGGTACCGGAATCTGAAGACAAGCCCGACACTAAATCCGATGCCGAATCTGATGCGAAACCCGCCACCGAACCCGATCCCAAACCCAACGCCGAACACGATGCCGAACCCGGCGCCGAACCCGATGCCAAACCCGACGGCGAATCCGATACCAAACCGGACGGCGAAACTGAAAAGGCCACAGATTCGGAACAAGTTACTGAAAAGGAAGAATCCAAAGAAGTGGAGGAAAAAGAAAAGAAAGAAGAAGAAAAGCAAGAAACTGTGGAGGCTGAACCGGAATCTCCGGTTCCGAGTCTCGACAAGGTTTTAGATGAGATTGACCAATTTCTCGTGACATTACAACAAAATGTCGAAGCCGGAGAATCAACCCCATTGGAAATCCCTAATTTCATCCCCGTTTTCTTGCATCTGGTGGAACAGAAGATAGTGAAGTACGACACGGGTGCAATGAAATGGGGAGAAACAATTGAAGACGATTCCTCGCTTTTGGGATGCGCGAATCGCATTTCGAGGCTGATGAACCATTTCATTGAGTACTCGCGATCTCACGCAGAGAAAGAACAAGGGGGCGAGGAGAAGGAGAAAGTCCGAATAGACTTCATGATCAACGGCGTCAGCGTGATTCAGCAGCGTGTGATGTCGTTTTTGGAGGACGAGTTCCGTACACTGATGGAAGAATCTAGAAACCCAAATAAAGGAGACTCAAAGGGAAAACAACAGGTGGCAGACTCCTTAGAGTCTGAGCCACTCGAAGAAAGTATTCCCGAATTCCCAGGTTTCACGGAGGAAGCCATTGCGAATCTGAACAAAATCGCCAAGGAAATGGTAGCCAGCGGTTACGAAAACGAGTGTTGCCAAGTCTACGCACTTTCACGGAGGCATGCGTTTGAGGACGGCATGAACAAAATTCTTGGGTACGAGAAGCTCAGCATAGACGAGATTCAGAGAATGCAGTGGGAAACACTGGAGCGCGAAATCCCCACATGGATCAACACCTGGAAGGAGTGCACCTCTGTATGGTTCCCCGGAGAGCGAAAGCTAGTAGAAATGGTGTTCGGCAACGAAGCAGACACCGTGGTGAGCCTCATGGGCAACATTTCCCGCTCAATTGTCATTCAGCTGCTTAATTTCGGGGAGAGCATTGCGATGACAAAACGCGCCGGCGAAAAACTCTTCAAACTCTTGGACATGTACGAGACTCTACGAGACGCCATTCCTATAATGGAGACCTTGTTCCCGGATGACATAATGGGGGAAATCAAGACCGAAACGACATCCGCAAAATGTCGTCTCGGCGAGGCAGCGGTGTTAATATTCTGCGACCTGGAGAATTCGATTAAATCGGAGACTGGAAGAACTCCGGTGGCGGGAGGCGCGGTTCATCCTCTGACACGTTATATCATGAACTACCTAAGGTTAGCGTGTGAGTATAAAGATACTTTGGAGGAAGTGTTCAAAGAGCATTCGAAAATCGAGCGTGCGGATTCAACTAGCAGGCCTCGCTACGAAACCGAGGAGAGCAAATCGAAGAACGAGAACAAACACAAAGAGGATGAGTCGCCGTTTGCAGCACAATTAATGCGGGTGATGGAACTTCTGGACTCGAATCTGGAGGGGAAGGCGAAGCTGTACAAGGAGGTTGCGTTGAGCTGCATTTTCATGATGAACAATGGAAGGTACATAGTGCAGAAGATAAAAGGATCTGCGGAGATCTACGAAGTGATGGGAGAAACGTGGTGTCGTAAGAGATCGACGGAGCTGAGGACTTACCACAAGAACTACCAGGTGGAGACGTGGAGCAAGATTCTGAGCTACCTGAGCCCTAAAGGATTAAGCGATCACGGGAAGGTGCAGAAGCCGGTGCTGAAGGAGCGGTTCAAGGCGTTCAACGCAGCATTTGAGGAGATTCACAAGACGCAGAGCATGTGGGTGGTGAGCGATGAACAGCTTCAATCGGAACTTAGGGTTTCCATCTCTGCACTTGTTATTCCTGCCTACAGATCCTTCTTGGGGAGGTTTTCACAGTATTTGGATCCGGGCAGACAAACCGAGAAGTATATAAAGTACCAAGCTGAGGATATAGAGACTTACATTGACGATTTGTTCGACGGGAACGCACACGGGCGTCGCTAG 2217 0.4903 MENNVNVNSSSVPHNEDNINTGETIQLPVPESEDKPDTKSDAESDAKPATEPDPKPNAEHDAEPGAEPDAKPDGESDTKPDGETEKATDSEQVTEKEESKEVEEKEKKEEEKQETVEAEPESPVPSLDKVLDEIDQFLVTLQQNVEAGESTPLEIPNFIPVFLHLVEQKIVKYDTGAMKWGETIEDDSSLLGCANRISRLMNHFIEYSRSHAEKEQGGEEKEKVRIDFMINGVSVIQQRVMSFLEDEFRTLMEESRNPNKGDSKGKQQVADSLESEPLEESIPEFPGFTEEAIANLNKIAKEMVASGYENECCQVYALSRRHAFEDGMNKILGYEKLSIDEIQRMQWETLEREIPTWINTWKECTSVWFPGERKLVEMVFGNEADTVVSLMGNISRSIVIQLLNFGESIAMTKRAGEKLFKLLDMYETLRDAIPIMETLFPDDIMGEIKTETTSAKCRLGEAAVLIFCDLENSIKSETGRTPVAGGAVHPLTRYIMNYLRLACEYKDTLEEVFKEHSKIERADSTSRPRYETEESKSKNENKHKEDESPFAAQLMRVMELLDSNLEGKAKLYKEVALSCIFMMNNGRYIVQKIKGSAEIYEVMGETWCRKRSTELRTYHKNYQVETWSKILSYLSPKGLSDHGKVQKPVLKERFKAFNAAFEEIHKTQSMWVVSDEQLQSELRVSISALVIPAYRSFLGRFSQYLDPGRQTEKYIKYQAEDIETYIDDLFDGNAHGRR* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1214 738 MobiDBLite consensus disorder prediction 1 127 - -
Vra1g1214 738 Pfam Exo70 exocyst complex subunit 357 728 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vra1g1214 738 MobiDBLite consensus disorder prediction 1 27 - -
Vra1g1214 738 MobiDBLite consensus disorder prediction 30 118 - -
Vra1g1214 738 PANTHER EXOCYST COMPLEX PROTEIN EXO70 98 738 IPR004140 GO:0000145|GO:0006887
Vra1g1214 738 SUPERFAMILY Cullin repeat-like 185 731 IPR016159 -
Vra1g1214 738 MobiDBLite consensus disorder prediction 518 548 - -
Vra1g1214 738 Gene3D Exocyst complex component Exo70 175 738 - -
Vra1g1214 738 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 98 738 - -
Vra1g1214 738 Coils Coil 93 119 - -
Vra1g1214 738 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1214 Vra-Chr1 16411767 16414198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1214 30 734 EXO70 exocyst subunit family AT5G13990 47.170 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1214 K07195 - gmx:100819960 924.465