Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1211 ATGGCTGCCAACACATTGATGAGTTCTGCTATCACAGCTTTCCCTTCTCTCCTTTCTTCCTCAAAATCAAGGTTTGCCTCAGCAGTCCCCATATCCAGCTTTGGCACCAATGTCTCTTCTAGGTTTTCCATGACTGCTGATTGGATGCCTGGCCAGCCTAGACCCCCTTATCTTGATGGTTCAGCACCAGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTGCCAGAGAATCTTGAGAGGTTCAAAGAATCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTTCCGGAGGCATTGGGCTTAGGAAACTGGGTAAAGGCTCAGGAATGGGCTGCAGTTCCTGGTGGCCAAGCTACCTACCTAGGAAACCCAGTTCCATGGGGCACACTACCCACCATTCTGGTAATTGAATTCCTTGCTATTTCCTTTGTGGAGCACCAAAGGAGCATGGAGAAAGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCCAAGGACCCTAAAGTATTCCATGAATACAAAGTCAAAGAACTTAAGAATGGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCGTTGTTCAACAATCAGCTTATCCTGGCACTGGACCTTTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATCGGAAACATCATTATTCCACAATCGATTTTGCCTTGA 735 0.4735 MAANTLMSSAITAFPSLLSSSKSRFASAVPISSFGTNVSSRFSMTADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLAISFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKVFHEYKVKELKNGRLALLAFVGFVVQQSAYPGTGPLENLATHLADPWHNNIGNIIIPQSILP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1211 244 SUPERFAMILY Chlorophyll a-b binding protein 39 238 - -
Vra1g1211 244 Pfam Chlorophyll A-B binding protein 55 209 IPR022796 -
Vra1g1211 244 Gene3D Chlorophyll a/b binding protein domain 49 235 - -
Vra1g1211 244 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC 20 234 - -
Vra1g1211 244 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 20 234 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1211 Vra-Chr1 16363268 16365392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1211 1 196 Chloroplast and Mitochondria Gene Families AT3G54890 81.818 7.39e-107 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1211 K08907 - gmx:100305992 471.855