Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1206 ATGCGAATGAGTTGTAATGGGTGTCGTGTGTTGCGAAAAGGGTGCAGTGAAGATTGTAGCATAAGACCGTGTTTGGAATGGATCAAGAACCCAGAATCGCAGGCTAATGCCACCGTTTTTCTTGCTAAGTTCTATGGTCGTGCTGGCCTCATGAATCTCATCAACGCTGGTCCTCAAAACCTTCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAACCCAATTTACGGGTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTATGTCAAGCCGCCGTGGAAGCCGTTTTGGAAGGCGAGCCGATCACACCAATCACATCGGAAGTGGCGGCGAATGGGCGGGCCCCACCTCTGAAGGCATGCGACATTCGCCACGTGTCAAAAGACAAGAACTCGGCGAATCGGACTCAAAAGGCCAAGACTCGAATCCGGGTTAAGCGAACCGGCGGTGATGTTCTTATCAAACCGAAAGCCCCGACGGTGACCAGGTTTGTTCCGGTTGAAGCGGAGACGAACCAGACTACGAGTCATGAATCGGGACTGAGCCACTTGTCGGAAGCTGCAGCCATCGTGGAAGGAGAGAGTAAAGAGAGTGAAAGTGTGGTGTCGGTGGAAACTTGCAACCTATTTGGTGAGACAAAGACGAGTGATCGATTCGGTGAAACTAATGATGAAATTGGTTTGGAATTGAGGCTTGGGTTTGAACCGGTTTCACGTGAGCATCACATGGTTCCAATGAAGAAGAGAAGAATAGAAGTGAAAAGTAACTGTGACTTAATGGAGTTAGGACTTGAGTCATCGGCTTCAAAATAA 834 0.494 MRMSCNGCRVLRKGCSEDCSIRPCLEWIKNPESQANATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLEGEPITPITSEVAANGRAPPLKACDIRHVSKDKNSANRTQKAKTRIRVKRTGGDVLIKPKAPTVTRFVPVEAETNQTTSHESGLSHLSEAAAIVEGESKESESVVSVETCNLFGETKTSDRFGETNDEIGLELRLGFEPVSREHHMVPMKKRRIEVKSNCDLMELGLESSASK* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1206 277 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vra1g1206 277 PIRSF AS2 1 276 IPR017414 -
Vra1g1206 277 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 261 - -
Vra1g1206 277 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 261 - -
Vra1g1206 277 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1206 Vra-Chr1 16239020 16240730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1206 1 264 AS2 family AT3G02550 60.806 3.17e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra1g1206 LOB 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1206 - - gmx:100814175 416.772