Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1202 ATGGCGACTCTCCCCGTGGTAAGTTTTCCGATCTTCACGGTGGTCAGGGTGGTCGGCGTCGCCGTCACCGTTCTTCTCCTCACATGGGCCGTCCATTTTCGGGGTGGCCTCGCTCTCGTCTCTGACAACAAAGATCTCATCTTTAACGTTCATCCTGTGTTGATGGTGATTGGGCTTGTTCTAATCAATGGTGAAGGGATGCTTGCATACAAGACTCTATCTGGAACTAAAAGCTTCAAAAAATCAGTTCATCTCACATTACAATTTGCTGCTCTCATTTTGAGCTTGATCGGTATCTGGGCTGCTTGGAAGTTTCACATTGACAAGGGCATTGACAACTTCTACAGCCTCCATTCATGGTTAGGCCTTGCATGCTTTTTCCTGTTCTTCATCCAGTGGGCTGCGGGGTTTGCAACATTTTGGTACCCTGGAGGGTCAAGAAATAGAAGAGCAACTTTACTGCCATGGCATGTTTTCTTTGGTATGTATATCTATGCCTTGGCCATAGCCACAACTGCTACTGGTATTTTGGAAAAAGCTACATTCCTTCAGGTGAACAAAATCATATCACGCTATTCCAATGAAGCACTTCTGATCAATTCTTTAGGCATTTTGATAGTCATTTTAGGTGGCTTTGTGATTCTTGGACTTATTACTCCAGTTTATGGTAAAGCTGATGTCATACGGGGAAATGAGTAA 699 0.4435 MATLPVVSFPIFTVVRVVGVAVTVLLLTWAVHFRGGLALVSDNKDLIFNVHPVLMVIGLVLINGEGMLAYKTLSGTKSFKKSVHLTLQFAALILSLIGIWAAWKFHIDKGIDNFYSLHSWLGLACFFLFFIQWAAGFATFWYPGGSRNRRATLLPWHVFFGMYIYALAIATTATGILEKATFLQVNKIISRYSNEALLINSLGILIVILGGFVILGLITPVYGKADVIRGNE* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1202 232 SMART 561_7 50 176 IPR006593 -
Vra1g1202 232 Gene3D - 1 230 - -
Vra1g1202 232 ProSiteProfiles Cytochrome b561 domain profile. 14 218 IPR006593 -
Vra1g1202 232 Pfam Eukaryotic cytochrome b561 50 182 IPR006593 -
Vra1g1202 232 CDD Cyt_b561_ACYB-1_like 41 184 - -
Vra1g1202 232 PANTHER CYTOCHROME B561-RELATED 4 231 IPR043205 GO:0016491
Vra1g1202 232 PANTHER B561, PUTATIVE-RELATED 4 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1202 Vra-Chr1 16138514 16141762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1202 4 228 Chloroplast and Mitochondria Gene Families AT5G38630 71.681 5.64e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1202 K08360 - gmx:100787570 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1202 1 16138514 16141762 Vra1g1202 1 16138514 16141762 ECH