Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1201 ATGGATCCCTCTCGCCGCGCCCCGCGCGCCGTGATTGACCCCGTTCCCAAGTTCCGCCAAGTCGGCTTCTTCGCCCCGCCCGAACGCTCTCAATCGGGTCCTCCAAACACGACTCACTCTTCGCCCCCAATCTCCAACTCCCTCTCGCCGGTCATGATCCCGCCGCCGCGCCACCTATCGGACAACCTCCTCATCCACGCGCCCCCCGCCTCATCTCCCCTTCGCGCAGACTCCGGCGGCGGCGGAACCTCCTTCGACAACGCGGACTTGTTCACCGCGCCGCTGTCGCCCGCTTTGCCATCGTCGTCGTACTCCAGCAGGATCGCCGGCGACTTCTACAAGGGAAACGGTGGGAAGGTGGCGGCCTCGTCTTTCCCCCGCGGTGGATTCGACCTGACGGCGATGAAGGCGGCGGCGGCCGCGAGCGTCGTCGTGCCGGCGAGCGAGCTGACCACGGTTTCGGTGGTGAATGATTCGCTAGGGATTCCCGAAAAAGAGAAAGGGAGCCGAGGAGGAGGGTCAGCAATGGAAGTGAAAGAGCAACCTGCTAGTTCAAAACAGAAACCAAAAACCTCAAAAGCTGAAAGACGTGCCCTTCAAGAAGCTCAAAGAGCTGCCAAGGCTGCAGCAAAAGCTGAAGGAAATAAAGCATCTGGAACTGCAGCCCCAGCAAATGCCAAACCATCTAAAGCTGCAAAGCCTGCTCAGAAAATTGATAATGCAACTGTTGCAGCATCTGAAAAGAAGGGAGGTGAGATTCCACCAGAAAAGGATAGAAAAAAAGATGCTCCTCAACCACGGATGCAATACGATGACAAGAGCCGAGTGGAGAAAGCTAAACGTCGTGCAGTGGTAAAACAAACTGAAGCTAGGAACAGGGTTGAGTTGTTTAGGCACTTGCCGCAATATGAACATGGGAGTCAGCTTCCAGATCTCGAGGCAAGGTTTTTCCATCTTTCTCCAGTGCACCCAGCTGTTTATAAGGTGGGTTTGCAGTATCTAACTGGAGATATATCTGGTGCCAATGCTCGGTGTATTGCAATGCTTCAAGCATTTCAGGAGGCCATCAAAGACTACAAGGTTCCACAGGAGAAGACTCTTGTGAGGGACTTAACAGCAAAAATTAGTAGTTATGTATCATTTCTTATTGAGTGTCGACCTCTGTCAATCAGCATGGGAAATGCTATTAGGTTTCTCAAAAGTCGGATAGCCAAGTTACCTTTGACCTTGTCTGAATCAGAAGCAAAAGCTTCTCTCCATTCAGATATTGAGCGTTTTATTAGTGAGAAGATTATACTCGCCAACAAAGTGATAGTGAAGCATGCTGTCACCAAAATAAGAGATGGTGATGTTCTTCTAACGTATGGGTCCTCGTCAGCTGTTGAAATGATACTATTACATGCACACGAGTTAGGAAGACAGTTTCGCGTTGTGGTAGTTGACTCTTGTCCAAAGCTTAGAGGGCAACTTTTGCTTCGCAGGCTGGTGGAGAAAGGTCTTAGCTGTACATACACTCATATAAATGCCGTTTCCTATATAATGCATGAAGTTACTCGAGTATTTCTGGGTGCTTCATCAGTTTTATCTAATGGAACAGTATATTCAAGAGTAGGGACTGCATGTGTTGCAATGGTTGCTCATGCGTTCCGTGTACCTGTCATAGTATGTTGTGAGGCATATAAATTTCATGAACGGGTACAGCTGGACTCAATATGCTCTAATGAACTTGGTGATCCAGATGTAATTTCAAATGTATTGGGTAGAGAGGATGTCAACCACTTGGATGGCTGGGCCAATATTGAAAATCTGCAACTCTTAAATCTCATTTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGGTTCCCCCTACAAGTGTGCCTGTAATTGTAAGAGAATACGGGAGAGAACAGGTCTGGATATGA 1944 0.4871 MDPSRRAPRAVIDPVPKFRQVGFFAPPERSQSGPPNTTHSSPPISNSLSPVMIPPPRHLSDNLLIHAPPASSPLRADSGGGGTSFDNADLFTAPLSPALPSSSYSSRIAGDFYKGNGGKVAASSFPRGGFDLTAMKAAAAASVVVPASELTTVSVVNDSLGIPEKEKGSRGGGSAMEVKEQPASSKQKPKTSKAERRALQEAQRAAKAAAKAEGNKASGTAAPANAKPSKAAKPAQKIDNATVAASEKKGGEIPPEKDRKKDAPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEARFFHLSPVHPAVYKVGLQYLTGDISGANARCIAMLQAFQEAIKDYKVPQEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFLKSRIAKLPLTLSESEAKASLHSDIERFISEKIILANKVIVKHAVTKIRDGDVLLTYGSSSAVEMILLHAHELGRQFRVVVVDSCPKLRGQLLLRRLVEKGLSCTYTHINAVSYIMHEVTRVFLGASSVLSNGTVYSRVGTACVAMVAHAFRVPVIVCCEAYKFHERVQLDSICSNELGDPDVISNVLGREDVNHLDGWANIENLQLLNLIYDATPSDYVSMIVTDYGMVPPTSVPVIVREYGREQVWI* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1201 647 MobiDBLite consensus disorder prediction 18 81 - -
Vra1g1201 647 PANTHER TRANSLATION INITIATION FACTOR EIF-2B DELTA SUBUNIT 1 647 - -
Vra1g1201 647 MobiDBLite consensus disorder prediction 30 47 - -
Vra1g1201 647 MobiDBLite consensus disorder prediction 250 285 - -
Vra1g1201 647 MobiDBLite consensus disorder prediction 155 285 - -
Vra1g1201 647 Gene3D - 433 640 IPR042529 -
Vra1g1201 647 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 647 - -
Vra1g1201 647 SUPERFAMILY NagB/RpiA/CoA transferase-like 321 640 IPR037171 -
Vra1g1201 647 Pfam Initiation factor 2 subunit family 338 630 IPR000649 GO:0044237
Vra1g1201 647 MobiDBLite consensus disorder prediction 183 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1201 Vra-Chr1 16107255 16116619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1201 4 647 Eukaryotic Initiation Factors Gene Family AT5G38640 65.527 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1201 K03680 - gmx:100775998 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1201 1 16107255 16116619 Vra1g1201 1 16107255 16116619 ECH
Vra4g1204 4 19017373 19023599 Vra1g1201 1 16107255 16116619 ECH