Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1200 ATGTTCCCTTACAGTTCCACCCCTTACCCTTCCTTCCCTTCATCATCTTCTTCGTTCCATCCTTTTCCTTTCCTCAACCTTGAGAATGCTTCTGCAAGCAACACCCTTCTTCACGATCCACTTTCTGTGCCTTACTTACCAACTCATCACAACCCTCCAAACATCCAAGAGGCACTGAGCAATTTGCCAGTCACAGATCATAACTGTGGTGGTGGAGGTTCTGCAATGACCAAACCTGACCCAAGTGGTGGTGGTGGTGGTGGTGGTTGTGGTGGTGCTCCTCACTATGGCCTCTCTTGTTTCCTCACAAAGAAGCCAGTTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGGTTGAGGGACCGGAGGGTGAGGTTATCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCTAAGAGAGCAATTAAGGAGCTGGCAAGGAGCAAGAACAGCACCAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGGTTTCGGAGATCAAGCAGAAGCAACAACTCATCTCTGGTGATGCTGCTGCTGCTGCTCCAAACAACCTACAACAAGGGTTAGATTCAAGCGATAACAAGTCACCGACATTTCTGGCTGCAAGGGAGAGGATGAAGTTGAAAAGGGCACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATGTGCAATGTTAATTCCAACACAGGGAGGGTGCAACAAGACCTGAAGAAAAAATGCCCTGCAATTGAAAATAGCCACTCTCACCATCTTGTTGGAAGTGAAGCACCTAGAGATGATTTCAACGTTATTGAGGAATCAATTGTGATCAAGAGAAAGTTGAAGCCATCATTGATGTCCTCTTCTCATCACCATCACCAAAACCTTATGATCCCTAAGGAACCACCATGTTTCAACAACAACAACAACATTGAGTACCACCACCCTTTCTCCAATTTATCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1215 0.4617 MFPYSSTPYPSFPSSSSSFHPFPFLNLENASASNTLLHDPLSVPYLPTHHNPPNIQEALSNLPVTDHNCGGGGSAMTKPDPSGGGGGGGCGGAPHYGLSCFLTKKPVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKNSTNSEEGAKSFSSSSECDDDCEVVSEIKQKQQLISGDAAAAAPNNLQQGLDSSDNKSPTFLAARERMKLKRAQKEPAKMKESREKARARARERTSNKIMCNVNSNTGRVQQDLKKKCPAIENSHSHHLVGSEAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLMIPKEPPCFNNNNNIEYHHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1200 404 MobiDBLite consensus disorder prediction 240 264 - -
Vra1g1200 404 Pfam TCP family transcription factor 107 269 IPR017887 -
Vra1g1200 404 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 403 - -
Vra1g1200 404 ProSiteProfiles TCP domain profile. 108 166 IPR017887 -
Vra1g1200 404 MobiDBLite consensus disorder prediction 168 188 - -
Vra1g1200 404 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 403 IPR005333 GO:0003700
Vra1g1200 404 ProSiteProfiles R domain profile. 251 268 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1200 Vra-Chr1 16061571 16063522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1200 103 177 TCP Transcription Factor Family AT1G67260 72.000 3.01e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra1g1200 TCP 1.7e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1200 - - gmx:100801549 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1200 1 16061571 16063522 Vra7g2009 7 39598492 39600406 ECH
Vra1g1200 1 16061571 16063522 Vra1g1200 1 16061571 16063522 ECH
Vra4g1205 4 19035879 19037816 Vra1g1200 1 16061571 16063522 ECH