Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1188 ATGCATATACATACACACTCTTTTCAGAAGGTTGTTTGTTATTGCTCTGCCAAGGAAAAAGAAGTGATGGAGGATGCGAAGGAGAAAAATTGGAGAATGGAAGCGGAAGAGAATCTGCAGAGGTTGCAATCTCTTCTGTTGGGTACGGAACACGCTCTAGCAAGCAAGGACTTCGCCTCCGCTTACGTCCTCGCGCTTCGTCTTCTCGGCTTCCTCGACGTGAAGTCCCACTCTGACGCCGTCGATGAGGCCTTCCTTCAACCGACTCGTCGCGACGCACTCTCCAAGCTCCACACTGCTCGCAGATCCCTCATCCCTCAATCTGATCGGCAAGCTTTTGAGCAAGCAAAGAAATCTCCAGGATACATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTCCGTGCTCTTGTCAACCAATCTAAAGAAAACGATGCGTATAAATTGGTTGATCACCCGGGGAAACAGGGCAAAACAGGCAGCAAAGCCTCGAAGCAAATGGTGCAAACGAAGCTATCATCCATGTATGGGAAAAGCAGTTTGTGGACTAGCAACTGTTCCCAGAGTTCTTTGAACATGAAAAATTACAGTTCTGAGGATTGTAGGATTCTTGGTAGGCCTCAATCTCAAGCCAGCCATACAAAGGGTCCTGGTGTCTCTTCTATCTTTCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACCAAACGTGTACACGTGGAAACTAATAATCTCAGAGTTGGATACTTGAAGTCACCTTCAAATAAGGACGAAGTTCACCCTGATGTTTGTGGCAAAGGGTTTATTACTGCTAGAGCAAAACTGGAAATTGAAGAAAAGCATAAGCGAGGAGCAGGCGGTTCACCCTGTAACTCTGTCTCACTGCAGTGTGATAACAATCCTGCCAACAGGTTACATGGTGGGAGATCATATAGTGTTTCACGACGTGGTTTCCGTAGTAATTTTGTTCCCCCTATAAAATCCAATGGGAATAATGCTGGAAATATGAGTGCACGAAATGCTGGAAAATGTGATGATTCTTTAGACGACTCTACAAGGAAATGTTTGGAAATCCTGTGTGGTCCTGACGGTGAGCTTCCAGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATCATGGATAAAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTATTGATGAGATGGTAATATATCCTTTGCAACGTCCTGACATATTCATGGGCTGTCGTGCACCTGGGAGGGGTCTTCTTTTGTTTGGTCCACCAGGAACCGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTGAGAGCCCTTTTTGGAGTTGCCAGTTGCCGTCAGCCTGCTGTAATTTTTGTTGATGAAATAGATTCTCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCCAGTAGACGGCTAAAGACACAGTTTCTCATCGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACTAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGGCTTTATATTCCCCTACCATCCTCAGAAGCAAGAGCTTGGATTGTACGTAACCTTCTACAGAAAGATGGACTATTCAATCTTTCAAACGAGGAAATGGATATCATATGCATCTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAGACAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGAGGAGTTACTCTTCAGGACTTCGAGAGCTCCCTCAGAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGCACGTATGATCAATGGAACAAGCAATTCGGAAGCTTATCATTGTAG 2049 0.4461 MHIHTHSFQKVVCYCSAKEKEVMEDAKEKNWRMEAEENLQRLQSLLLGTEHALASKDFASAYVLALRLLGFLDVKSHSDAVDEAFLQPTRRDALSKLHTARRSLIPQSDRQAFEQAKKSPGYIFGTTGDIDIEKIRNSKYFRALVNQSKENDAYKLVDHPGKQGKTGSKASKQMVQTKLSSMYGKSSLWTSNCSQSSLNMKNYSSEDCRILGRPQSQASHTKGPGVSSIFQVEGEERAFGNTFSTKRVHVETNNLRVGYLKSPSNKDEVHPDVCGKGFITARAKLEIEEKHKRGAGGSPCNSVSLQCDNNPANRLHGGRSYSVSRRGFRSNFVPPIKSNGNNAGNMSARNAGKCDDSLDDSTRKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCIDEMVIYPLQRPDIFMGCRAPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLQKDGLFNLSNEEMDIICILTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRGVTLQDFESSLREVRPSVSPNELGTYDQWNKQFGSLSL* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1188 682 Pfam ATPase family associated with various cellular activities (AAA) 441 571 IPR003959 GO:0005524|GO:0016887
Vra1g1188 682 SMART AAA_5 437 573 IPR003593 -
Vra1g1188 682 PANTHER FIDGETIN-LIKE PROTEIN 1 88 679 - -
Vra1g1188 682 Coils Coil 32 52 - -
Vra1g1188 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 677 IPR027417 -
Vra1g1188 682 Gene3D - 572 658 - -
Vra1g1188 682 Pfam AAA+ lid domain 604 643 IPR041569 -
Vra1g1188 682 ProSitePatterns AAA-protein family signature. 543 562 IPR003960 GO:0005524|GO:0016887
Vra1g1188 682 CDD AAA 434 571 - -
Vra1g1188 682 PANTHER AAA DOMAIN-CONTAINING 88 679 - -
Vra1g1188 682 Gene3D - 400 674 IPR027417 -
Vra1g1188 682 Pfam Vps4 C terminal oligomerisation domain 645 678 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1188 Vra-Chr1 15631575 15643730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1188 378 680 Calmodulin-binding Proteins AT3G56690 31.169 4.43e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1188 K22766 - gmx:100789161 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1264 4 19562713 19572099 Vra1g1188 1 15631575 15643730 PCT