Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra1g1175 | ATGGTCACTCTTTTACACTTCTTTCTCACATTCATGGTTCTTCTCTTCTCTTGGAACTTCTTCTTCAAAACAAGAAGGTTCTGGAACCTTCCTCCAGGGCCATTCTCCTTCCCGATAATCGGAAACCTCCACCAGATGAGACAGCCGCTCCACCGCACGTTCCACGCCCTTTCTCAGAAACACGGCAAAGTCTTCTCTCTCTGGTTCGGTTCGCGCTTCGTCGTTGTCGTTTCGTCGGTCGAGGCAGTGCAGGAATGCTTCACCAAAAACGACATCGTCTTGGCGAATCGGCCTCTCTTCCTCGCCGGCAAGTACATAGGATACAACAACACCACCGTCGCGGTGTCGCCCTACGGCGACCACTGGCGCAACCTCCGCCGCATCATGTCGCTCGAGGTTCTCTCAACGCACCGTTTGAATTGCTTCTTGGAAATCCGAAGGGACGAGATCATGAGGCTCGTGCGAAAGCTCGCTCACGACTCGCGCAACGGCTTCGCCAAAGTGGAACTCAAATCCAGCTTTTCGGAAATGACTTTTAACACTATAATGAGGATGGTGTCTGGGAAGAGATATTACGGTGAAGATTGTGATGTGAGTGATGTGGAAGAAGCAAGGCAATTTCGAGGGATTATTAAAGAGTTGGTGGCTTTGGGAGGGGCAAATAATCCTGGAGACTTCTTGGCTTTGCTGAGGTGGTTTGATTTTGATGATTTGGAGAAGAAGCTGAAGAGAATTAGTAAGAGAACCGATGCCTTTTTACAAGGACTCATCGATGAACATCGTAACAGAAAACAAAGCGCCAATACTATGATAGATCATCTTTTAACACAACAACAATCACAACCTGAGTACTACACTGATGAAATCATCAAAGGACTTGCCCTGGTTATATTAATGGCAGGAACAGACACATCAGCTGTAACTTTGGAATGGGCAATGAGTAATTTATTAAACCATCCAGAGATACTAAAGAAGGCAAAAAGGGAATTAGACACTCATATAGGTCAGAACCGTCTAGTAGATGAAGTTGACATTCCTAAACTTCCTTATATTCAAAGCATTGTCTATGAGACACTTCGTCTGCATCCTGCGGCTCCAATGTTGGTACCTCATTTCTCTTCAGAAGATTGCACCATTGGAGATTACAATCTTCCACAGAAAACAATTTTGTTAGTGAATGCTTGGGCTATTCACAGAGATCCCAATTTGTGGAGTGACCCAACACATTTTAAGCCTGAAAGGTTTGAAAATGAAAGTGAAGTTAACAAGTTGCTTCCTTTTGGATTAGGGAGAAGGGCTTGTCCTGGATCAAACTTAGCTCAACGTACAGTGAGCTTAACTTTGGCTTTATTGATTCAATGTTTTGAGTGGAAACGAACCAGTATTGAAGAAATTGATCTGATTGAAGGAAAAGGAATCACTGTAGGAAGAAAGTTTCCCTTAGAAGCTATGTGCCAAGTGTGGCAATCATCAGCAATGAAGGATATTTTCTAG | 1494 | 0.4418 | MVTLLHFFLTFMVLLFSWNFFFKTRRFWNLPPGPFSFPIIGNLHQMRQPLHRTFHALSQKHGKVFSLWFGSRFVVVVSSVEAVQECFTKNDIVLANRPLFLAGKYIGYNNTTVAVSPYGDHWRNLRRIMSLEVLSTHRLNCFLEIRRDEIMRLVRKLAHDSRNGFAKVELKSSFSEMTFNTIMRMVSGKRYYGEDCDVSDVEEARQFRGIIKELVALGGANNPGDFLALLRWFDFDDLEKKLKRISKRTDAFLQGLIDEHRNRKQSANTMIDHLLTQQQSQPEYYTDEIIKGLALVILMAGTDTSAVTLEWAMSNLLNHPEILKKAKRELDTHIGQNRLVDEVDIPKLPYIQSIVYETLRLHPAAPMLVPHFSSEDCTIGDYNLPQKTILLVNAWAIHRDPNLWSDPTHFKPERFENESEVNKLLPFGLGRRACPGSNLAQRTVSLTLALLIQCFEWKRTSIEEIDLIEGKGITVGRKFPLEAMCQVWQSSAMKDIF* | 498 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra1g1175 | 497 | PANTHER | CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED | 6 | 488 | - | - | |
| Vra1g1175 | 497 | SUPERFAMILY | Cytochrome P450 | 31 | 484 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 58 | 77 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 82 | 103 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 177 | 195 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 289 | 306 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 309 | 335 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 352 | 370 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 393 | 417 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 424 | 434 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | E-class P450 group I signature | 434 | 457 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | Gene3D | Cytochrome P450 | 22 | 486 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | Coils | Coil | 257 | 277 | - | - | |
| Vra1g1175 | 497 | Pfam | Cytochrome P450 | 31 | 470 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 427 | 436 | IPR017972 | GO:0005506|GO:0016705 | |
| Vra1g1175 | 497 | PANTHER | FLAVONOID 3'-MONOOXYGENASE-RELATED | 6 | 488 | - | - | |
| Vra1g1175 | 497 | PRINTS | P450 superfamily signature | 300 | 317 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | P450 superfamily signature | 353 | 364 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | P450 superfamily signature | 425 | 434 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vra1g1175 | 497 | PRINTS | P450 superfamily signature | 434 | 445 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra1g1175 | Vra-Chr1 | 15242029 | 15244373 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra1g1175 | 5 | 490 | Cytochrome P450 | AT4G37370 | 55.828 | 0.0 | 562 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra1g1175 | K13260 | - | gmx:100811727 | 865.914 |