Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1172 ATGAGTTCCTACAAGTCATCGCCATCGTCCTCCAAAACCAAAAAGAAGCAAACCACAACACAAGACCATCAACAACATGAAACGGTTTGGGGAGGGAGGTATCTTGGTGTGAGGAGGAGGCCGTGGGGAAGGTATGCGGCGGAAATTCGGGACCCTTCCACCAAGGAAAGACATTGGTTGGGTACATTTGACACCGCAGAAGAGGCTGCTCTGGCTTATGACAGGGCGGCCCGCTCCATGCGTGGACCACGTGCCCGAACCAATTTCGTCTACCCGGATACTCAACCGGGTTCTTCCGTCACCACTATCCTCTCCCCTGATGAACAAACTCAAACCCAAATCCAAATCCATCAGGTACAAGAAGACCTCTCGTCTTTACTGAACCCGAACCTCTTTTCACAACCTGACCCAAACCCGCAATTTTCCTTGGGCGGGTACTCGGGTGTAACGAACACTCCCACATTTTCTACCACCGAAGTTGTTTCGTCTGGTGGCTATAGCTATAGTTATGGTTACACCGAAGGAGGAAGCAACGTGGAGGATTCACATTCACATTCTCATTTTAATCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATTGCCTATGAAACGGGGCATGGACTTTACGGAGACGGTGTCGGGTTTTCGGACCCGAGTTTTAGTTTGACTGATACCGGATCGAGTTACCCGTTTTCTGGGTTCGAATCGGGTGATTACGTGGTGCACAGTCCACTTTTCAGTGCAATGCCACCTGTGTCCGATAACGTGGCAATGGGTCACGAGGATTTTGATTTGGGAAGCTCTTCTTATTTCTTCCGAAATTAG 852 0.4977 MSSYKSSPSSSKTKKKQTTTQDHQQHETVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYPDTQPGSSVTTILSPDEQTQTQIQIHQVQEDLSSLLNPNLFSQPDPNPQFSLGGYSGVTNTPTFSTTEVVSSGGYSYSYGYTEGGSNVEDSHSHSHFNLFDDGETQLPPLPPDITSSIAYETGHGLYGDGVGFSDPSFSLTDTGSSYPFSGFESGDYVVHSPLFSAMPPVSDNVAMGHEDFDLGSSSYFFRN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1172 283 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vra1g1172 283 MobiDBLite consensus disorder prediction 1 15 - -
Vra1g1172 283 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Vra1g1172 283 MobiDBLite consensus disorder prediction 1 32 - -
Vra1g1172 283 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Vra1g1172 283 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vra1g1172 283 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vra1g1172 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 281 - -
Vra1g1172 283 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 281 - -
Vra1g1172 283 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Vra1g1172 283 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vra1g1172 283 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1172 Vra-Chr1 15148747 15150046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1172 9 272 AP2-EREBP Transcription Factor Family AT5G13910 45.660 1.69e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra1g1172 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1172 K09286 - gmx:100815668 406.371