LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra1g1165	ATGAAACATTTGGAATTCTATGTTGTTTTGCTTTTGTCAATCTTTGTGGGAATTGGCTTAGCTTATCCCACAGAGGATCAGTTAAAGGATAGAATTATCAAGCTGCCAGGACAGCCAGAGAACGTGCTTTTTTCTCAGTACTCGGGCTATGTGACAGTGAATGAGGAAGCTGGAAGAGCTTTGTTTTATTGGCTGGTAGAGACAGAAGAAGATAGTACTTCAAAGCCACTTGTTTTGTGGTTTAACGGTGGCCCTGGATGCTCCTCTATTGCTTATGGAGCAGCTGAAGAAATTGGTCCTTTTCGAATCAATCCTGATGGCAAATCACTTTACTCCAATCCTTATGCTTGGAACAAATTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGATTTTCATATTCCAATACCACATCAGATCTGTATACAGCAGGTGACCAGAAAACAGCTGAAGATGCATATACGTTCCTTGTTAATTGGCTTGAAAGGTTTCCTCAGTACAAGCATAGAGATTTCTACATTGCCGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGTCTCAAGTCATTTATCGCAAAAATAAAGGAATCGAGAACCCAGATATAAATTTCAAGGGGTTTATGGTTGGAAATGCTGTGATAGATGATTACCATGACTACATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATGACACATATAAACTGCTGAGAATTGTGTGTGAGTTTGATTCTTCTCAGCATCCACCAGATAAATGTGTGGAAGCTTTTGAGATTGCAACTGCTGAGCAGGGGAACATTGATCCATATAGCATTTATACTCCTGTATGCAATGCTACAGCTGCAACACTCAAACCCCGTTTAAGGGGTCGCTTAGGAAGACTGTATGGAGCATACGAATACGATCCCTGCACTTCGACGTACGCTGAGGTGTATTTCAATCTTCCAGAAGTTCAGAAGGCTCTTCATGCGAACGTAACAGGGATTCCTTATTCATTTGCAGGATGCAATGACATTGTTGTGAACAATTGGGGTGATTCTCCCCTTTCTATGCTTCCAATATATCAAGAAATTCTTGATGCTGGCCTCAGGATATGGGTCTACAGTGGAGACACTGATTCAGTGGTGCCTGTAACTGCAAGTCGGTATTCAATTGCTTCATTGAACCTCCCTACCATCATCAACTGGTACCCTTGGAATGATAATGGCGAGGTTGGTGGTTGGAGTCAAGTTTACAAAGGACTCACATTGGTTGCAGTAAGAGGGGCAGGGCACGAGGTTCCACTTTTTAGACCTCGTCAAGCTTTTACCCTTTTCAAATCATTCCTCGAGAACAAGAACCTGCCATTTTCAACTGTTACGACTCAACCACTGAACCATAGACTTAGATCAGTTAGGCCCAAAAGAAAGATCACTATGCCATCTTCCATGCATCACTTTCCGAGCTAG	1470	0.4218	MKHLEFYVVLLLSIFVGIGLAYPTEDQLKDRIIKLPGQPENVLFSQYSGYVTVNEEAGRALFYWLVETEEDSTSKPLVLWFNGGPGCSSIAYGAAEEIGPFRINPDGKSLYSNPYAWNKLANILFLDSPAGVGFSYSNTTSDLYTAGDQKTAEDAYTFLVNWLERFPQYKHRDFYIAGESYAGHYVPQLSQVIYRKNKGIENPDINFKGFMVGNAVIDDYHDYIGTFEYWWVNGLISDDTYKLLRIVCEFDSSQHPPDKCVEAFEIATAEQGNIDPYSIYTPVCNATAATLKPRLRGRLGRLYGAYEYDPCTSTYAEVYFNLPEVQKALHANVTGIPYSFAGCNDIVVNNWGDSPLSMLPIYQEILDAGLRIWVYSGDTDSVVPVTASRYSIASLNLPTIINWYPWNDNGEVGGWSQVYKGLTLVAVRGAGHEVPLFRPRQAFTLFKSFLENKNLPFSTVTTQPLNHRLRSVRPKRKITMPSSMHHFPS*	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra1g1165	489	Pfam	Serine carboxypeptidase	36	452	IPR001563	GO:0004185\|GO:0006508
	Vra1g1165	489	ProSitePatterns	Serine carboxypeptidases, histidine active site.	422	439	IPR033124	GO:0004185
	Vra1g1165	489	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 26	23	453	-	-
	Vra1g1165	489	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	23	453	IPR001563	GO:0004185\|GO:0006508
	Vra1g1165	489	ProSitePatterns	Serine carboxypeptidases, serine active site.	176	183	IPR018202	GO:0004185
	Vra1g1165	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	113	125	IPR001563	GO:0004185\|GO:0006508
	Vra1g1165	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	126	136	IPR001563	GO:0004185\|GO:0006508
	Vra1g1165	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	162	187	IPR001563	GO:0004185\|GO:0006508
	Vra1g1165	489	PRINTS	Carboxypeptidase C serine protease (S10) family signature	422	435	IPR001563	GO:0004185\|GO:0006508
	Vra1g1165	489	Gene3D	-	311	347	-	-
	Vra1g1165	489	Gene3D	alpha/beta hydrolase	27	286	IPR029058	-
	Vra1g1165	489	SUPERFAMILY	alpha/beta-Hydrolases	29	455	IPR029058	-
	Vra1g1165	489	Gene3D	-	358	451	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra1g1165	Vra-Chr1	14937571	14946360	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra1g1165	316	455	Calmodulin-binding Proteins	AT2G22960	29.078	4.62e-13	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra1g1165	K16297		-	gmx:100796815	773.467