LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra1g1164	ATGAAACATTTGGAATTCCATGCTGTTTTGCTTTTGTCAATCTTTGTGGGAATTGGCTTAGCTTATCCCACAGAAGATCAGTTAAAGGATAGGATTACCAAGCTGCCAGGACAGCCAGAGAACGTGTTTCTTTCTCAGTATTCGGGCTATGTGACTGTGAATGAGGAAGCTGGAAGAGCTTTGTTTTATTGGCTGGTAGAGACAGAAGAAGCTAATACTTCAAAGCCACTTGTTTTGTGGCTTAATGGTGGTCCTGGATGCTCCTCTATTGCTTATGGAGCGGCTGAAGAAATTGGTCCTTTTCGAATCAATCCTGATGGCAAATCACTTTACTCCAATCCTTATGCTTGGAACAAATTGGCAAATATACTCTTCCTCGATTCTCCTGCTGGTGTTGGATTTTCATATTCCAATACCACATCAGATCTGTACACAGCAGGTGACCAGAAAACAGCTGAAGATGCATATACATTCCTTGTTAATTGGCTCGAAAGGTTTCCTCAGTACAAGCATAGAGATTTCTACATTGCCGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGCTGTCTCAAGTCATTTATCGCAAAAATAAAGGAATCGAGAACCCAGATATAAATTTCAAGGGGTTTATGGTTGGAAATGCTGTAATAGATGATTACTATGACTACATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATGACACATATAAACGGCTGAGAATTGCGTGCGAGTTTGATTCTTCTCTGCATCGACCACAGAATTGTGGGATAGCTTTTGCCATTGCAAGTATTGAGCAGGGAAACATTGATCCATATAGCATTTATACTCCTGTGTGCAATGCTACAGCTGCAACACTCAAACCCCATTTAAGGGGTCCCTTGGGAAGACTGTATGGAGCATTCGATCCCTGCACTTCGACGTACTCTGAGGTGTATTTCAATCGTCCAGACGTTCAGAAGGCTCTTCATGCGAACGTAACAGGGATTCCTTATTCATGGACAGCATGCAATTATATTGTTGTGAGGAATTGGGGTGATTCTCCGCTTTCTATGCTTCCAATATACCAAGAAATTCTTGATGCTGGCCTCAGGATATGGGTCTACAGTGGAAACACTGATTCAGTGGTGCCTGTAACTGCGAGTCGGTATTCAATTGCTTCATTGAACCTGCCCACTATCATCAACTGGTACCCTTGGAATGATAATGGCGAGGTTGGTGGTTGGAGTCAAGTTTACGAGGGACTTACATTTGTTGCAGTAAGAGGGGCAGGGCATGAGGTTCCACTTCATAGACCTCGTCAAGCTTTTACCCTTTTCAAATCATTCCTCGAGAACAAGAATCTGCCATTTTCAACTCTTACCACTCAATCACTCAACCATAAAAGATCGGTTAGGCCAAAAAGAAAGATCACTATGCCATCTTCCATGCACCACTTTCCTAGTTAG	1461	0.4251	MKHLEFHAVLLLSIFVGIGLAYPTEDQLKDRITKLPGQPENVFLSQYSGYVTVNEEAGRALFYWLVETEEANTSKPLVLWLNGGPGCSSIAYGAAEEIGPFRINPDGKSLYSNPYAWNKLANILFLDSPAGVGFSYSNTTSDLYTAGDQKTAEDAYTFLVNWLERFPQYKHRDFYIAGESYAGHYVPQLSQVIYRKNKGIENPDINFKGFMVGNAVIDDYYDYIGTFEYWWVNGLISDDTYKRLRIACEFDSSLHRPQNCGIAFAIASIEQGNIDPYSIYTPVCNATAATLKPHLRGPLGRLYGAFDPCTSTYSEVYFNRPDVQKALHANVTGIPYSWTACNYIVVRNWGDSPLSMLPIYQEILDAGLRIWVYSGNTDSVVPVTASRYSIASLNLPTIINWYPWNDNGEVGGWSQVYEGLTFVAVRGAGHEVPLHRPRQAFTLFKSFLENKNLPFSTLTTQSLNHKRSVRPKRKITMPSSMHHFPS*	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra1g1164	486	SUPERFAMILY	alpha/beta-Hydrolases	29	453	IPR029058	-
	Vra1g1164	486	Gene3D	alpha/beta hydrolase	27	286	IPR029058	-
	Vra1g1164	486	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	24	451	IPR001563	GO:0004185\|GO:0006508
	Vra1g1164	486	Pfam	Serine carboxypeptidase	36	450	IPR001563	GO:0004185\|GO:0006508
	Vra1g1164	486	ProSitePatterns	Serine carboxypeptidases, serine active site.	176	183	IPR018202	GO:0004185
	Vra1g1164	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	113	125	IPR001563	GO:0004185\|GO:0006508
	Vra1g1164	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	126	136	IPR001563	GO:0004185\|GO:0006508
	Vra1g1164	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	162	187	IPR001563	GO:0004185\|GO:0006508
	Vra1g1164	486	PRINTS	Carboxypeptidase C serine protease (S10) family signature	420	433	IPR001563	GO:0004185\|GO:0006508
	Vra1g1164	486	Gene3D	-	309	345	-	-
	Vra1g1164	486	Gene3D	-	356	449	-	-
	Vra1g1164	486	ProSitePatterns	Serine carboxypeptidases, histidine active site.	420	437	IPR033124	GO:0004185
	Vra1g1164	486	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 26	24	451	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra1g1164	Vra-Chr1	14910082	14920674	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra1g1164	314	453	Calmodulin-binding Proteins	AT2G22960	28.369	2.66e-13	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra1g1164	K16297		-	gmx:100796815	759.985