Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1153 ATGGAAGGCTTTGTTGTAAAAGAGGACATAAAATTGCCGATTGGGTTCAGGTTTCGTCCCACAGATCAAGAACTTCTCCTTTACTACCTCAAGAAAAAGGCCTTTGCTCAACCATTACCTGCTTCAGTCATTCCAATCTGTGATGTCTTTCAGTCTGATCCATGGCTGCTTCCAGGTTCCGGTTGTTGGAAATGTGTTGGAAAAGAAAAAGAAATAAGGGTTTGTGATAGCAATGAAGTAATTGGGATGAAGAAAACATTGATATTCTGCAAAGGTTCCCATCAAACAAGAACTCGCTGGGTCATGCACGAATTGCGTCTTGTAACTTCCTACGCATATAAGATGGCAGTGGCAGATTTTGCTGTGTATGTCATATTTCAGAAAAGGAAGAAGATGACAAAAGCATCTCAGCAGAGACCCTTTTGTAGCAGCAAACTTCAGAGAGTACATGATGTTAAAGCTAGTATAATAGATTTTGAAATGGAATTTGGCCACGATAATATAGTGCTTCCACCACCTTCTTCCCCATGTTGA 534 0.4045 MEGFVVKEDIKLPIGFRFRPTDQELLLYYLKKKAFAQPLPASVIPICDVFQSDPWLLPGSGCWKCVGKEKEIRVCDSNEVIGMKKTLIFCKGSHQTRTRWVMHELRLVTSYAYKMAVADFAVYVIFQKRKKMTKASQQRPFCSSKLQRVHDVKASIIDFEMEFGHDNIVLPPPSSPC* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1153 177 ProSiteProfiles NAC domain profile. 1 128 IPR003441 GO:0003677|GO:0006355
Vra1g1153 177 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 60 134 - -
Vra1g1153 177 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 58 - -
Vra1g1153 177 Pfam No apical meristem (NAM) protein 13 60 IPR003441 GO:0003677|GO:0006355
Vra1g1153 177 Pfam No apical meristem (NAM) protein 60 107 IPR003441 GO:0003677|GO:0006355
Vra1g1153 177 Gene3D NAC domain 60 134 IPR036093 GO:0003677|GO:0006355
Vra1g1153 177 Gene3D NAC domain 21 59 IPR036093 GO:0003677|GO:0006355
Vra1g1153 177 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 58 - -
Vra1g1153 177 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 60 134 - -
Vra1g1153 177 SUPERFAMILY NAC domain 7 128 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1153 Vra-Chr1 14618136 14619942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1153 10 134 NAC Transcription Factor Family AT5G13180 38.710 4.21e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g1153 NAM 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1153 - - vra:106767617 353.214