Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1151 ATGGGGAAAAAAGGAAGTTGGTTTTCAGCAGTGAAGAAAGTTTTCAGCCCAGATTCCAAAAAAGATAAGAAAAAACAGAAAAGTCACAAGTCAAGCAGTAACAAGGAGGGGGAAATTGCAGCAGATGTTAAATTAATTGAGGCAGAGAAAGAACAAAGCAAGCATGCTGCTTCTTTGGCTTTTGCCACTGCTGTTGCAGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGTATGCCACATTACACTGGAAAGACCATGGAAGAGATTGCAGCTGTCAAGATTCAGACTGTATTTCGTGGATATATGGCAAGAAGAGCATTGCGTGCCCTGAGAGGTTTGGTGAGGCTGAAAACCGTAGTGCAAGGGCAATCTGTTAAAAGACAAGCTTCTAGCACCCTACGAAGTATGCAAACTCTAGCAAGATTACAGTCTCAGATTCGTGAAAGGAGAATTAGAATGTCTGAAGAGAACCAAGCTCTTCAGCGCCAATTGCAGCAGAAACATGAAAAAGAACTTGAGAACCTGCGTGCTGCTCAGGTTGGAGAAGAATGGGATGACAGTTTACAGTCAAAGGAGCAAATTGAAGCCAAATTGTTGCACAAACAAGAAGCAGCTTTAAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGAAAACATGGAAGGGCACTTCAAAGTCATTAAATCCCACATATATGGACCCAAACAATCCCCAATGGGGGTGGAGTTGGTTAGAGAGGTGGATGGCTACTCGGCCATGGGATGGCCACAGCACTGCGGATCACAATGATCATGCATCTGTGAAGAGTGCAGCAAGCAGGGCCATGACAGTAGGAGAAATTGTGAAAGGTTATTCTCTCCAAGACCATAACCATGACAAAAGAGCTTCCCCTTTTGGCCAAAAGGCAAGAAGACCATCCCCTCACATTTCACCTTCAAAGGCACTATCTGCTAGTGGCAAGGCAAGGCCATCAAGCTCAAAGGGTAGTGTGTTCTGGGGTGGAGATGAGGACTCAAGAAGCATGTTCAGCATTCAATCAGAGAGATATCGCCGACACAGCATTGCAGGATCCTCAGTGAGAGATGATGACAGTCTTGCAAGCTCCCCTGCCATTCCAAGTTATATGGCACCTACAAGCTCAGCCAAGGCCAGGTTCAAAATCCAAAGGCCTTCACCTGAGAAAGGAGGTGCTGCTGTAAGGAAACGTCTTTCTTTCTCTCCTTCAGCTGCTCCAAGAAGGCATTCTGATCCTCCTAAACCCTAA 1293 0.4609 MGKKGSWFSAVKKVFSPDSKKDKKKQKSHKSSSNKEGEIAADVKLIEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGKTMEEIAAVKIQTVFRGYMARRALRALRGLVRLKTVVQGQSVKRQASSTLRSMQTLARLQSQIRERRIRMSEENQALQRQLQQKHEKELENLRAAQVGEEWDDSLQSKEQIEAKLLHKQEAALRRERALAYSFSHQKTWKGTSKSLNPTYMDPNNPQWGWSWLERWMATRPWDGHSTADHNDHASVKSAASRAMTVGEIVKGYSLQDHNHDKRASPFGQKARRPSPHISPSKALSASGKARPSSSKGSVFWGGDEDSRSMFSIQSERYRRHSIAGSSVRDDDSLASSPAIPSYMAPTSSAKARFKIQRPSPEKGGAAVRKRLSFSPSAAPRRHSDPPKP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1151 430 MobiDBLite consensus disorder prediction 293 347 - -
Vra1g1151 430 PANTHER IQ-DOMAIN 5-RELATED 7 429 - -
Vra1g1151 430 MobiDBLite consensus disorder prediction 17 37 - -
Vra1g1151 430 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Vra1g1151 430 MobiDBLite consensus disorder prediction 295 309 - -
Vra1g1151 430 Coils Coil 147 181 - -
Vra1g1151 430 MobiDBLite consensus disorder prediction 363 430 - -
Vra1g1151 430 MobiDBLite consensus disorder prediction 321 335 - -
Vra1g1151 430 Pfam IQ calmodulin-binding motif 98 116 IPR000048 GO:0005515
Vra1g1151 430 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 7 429 - -
Vra1g1151 430 SMART iq_5 94 116 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1151 Vra-Chr1 14592372 14597675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1151 1 429 IQD Protein Family AT5G03040 48.276 2.09e-130 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1151 - - gsj:114412345 615.15