Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1144 ATGGCTCCCAAACCACCCAGTACGGGTTTATTTGTTGGGTTGAACAAGGGTCACATCCTTACCAAGAAGGAGTTGCCCCCACGGCCCTCCGATCGCAAAGGGAAAACCAGCAAAAGGGTGCACTTTGTGAGGAACCTCATCAGAGAGGTTGCTGGTTTTGCACCTTATGAAAAGCGTATAACTGAGTTACTCAAGGTGGGAAAAGATAAGAGGGCACTCAAGGTTGCTAAGAGAAAGCTTGGAACCCATAAACGTGCTAAGAAGAAGAGAGAAGAGATGTCTAATGTTCTCAGGAAGATGAGGGCTGGTGGAGCTGGAGACAAGAAGAAATAG 333 0.4745 MAPKPPSTGLFVGLNKGHILTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGAGDKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1144 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vra1g1144 110 MobiDBLite consensus disorder prediction 87 110 - -
Vra1g1144 110 MobiDBLite consensus disorder prediction 1 37 - -
Vra1g1144 110 Gene3D 60S ribosomal protein L36 2 108 IPR038097 -
Vra1g1144 110 MobiDBLite consensus disorder prediction 79 110 - -
Vra1g1144 110 PANTHER 60S RIBOSOMAL PROTEIN L36-1-RELATED 1 110 - -
Vra1g1144 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 110 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vra1g1144 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1144 Vra-Chr1 14467869 14469799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1144 7 110 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 82.692 3.63e-58 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1144 K02920 - gmx:100785591 219.55