Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1123 ATGGCGCATCAAGGGGAACCGGCAAAGCTGCGGTGGGGCGAGCTGGAGGAGGACGACGGCGAGGATCTGGACTTCCTCCTCCCGCCGCGACAGGTCATAGGGCCTGATGACAACGGGATAAAGAAGGTGATTGAGTACAAGTTCGACGAGGACGGTAACAAGGTGAAGATAACAACCACCACGCGCACTCGAAAGCTCGCCAACGCGCGTCTCAGCAAACGCGCGGTCGAGCGTCGCTCCTGGCCCAAGTTCGGTGACGCCGTCCACGAAGAAGTCGGCAGCCGCCTCACCATGGTATCCACGGAAGAGATCCTCCTCGAACGCCCCAAGCCTCTCGGATCCAAAACGGAGGAGCCGAAGACTGGTGGAGACCCCTTGGCTCAATTCCAGAAAGGTGCTGTTCTGATGGTGTGTAGGACTTGTGGGAAGAAGGGTGATCACTGGACCTCAAGGTGTCCATACAAGGATCTCGCCCCGCCATCTGAGGGATTCGTGGATAAGCCTGCAACATTAGATGCTGCAGCGGCAACAGGTGGCGCAACCAAGGGAGCCTATGTGCCTCCTGGTATGAGGGCTGGGGCTGAGAGGAGTAGTGGATCTGATATGCGGCGAAGGAATGATGAGAACTCTGTGAGGGTAACCAACCTCTCTGAAGACACAAGAGAACCAGATTTGCTGGAGCTGTTCCGTCCTTTTGGTCCTGTGAGCAGAGTTTATGTTGCCATTGATCAGAAGACTAGCATGAGCAGGGGCTTTGGCTTTGTAAACTTTGTGAACAGGGAAGATGCACAAAGAGCTATCAACAAACTTAATGGGTATGGATACGATAATCTGATACTTAGAGTTGAATGGGCGACCCCTAGGGCAAACTAG 873 0.5452 MAHQGEPAKLRWGELEEDDGEDLDFLLPPRQVIGPDDNGIKKVIEYKFDEDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEEVGSRLTMVSTEEILLERPKPLGSKTEEPKTGGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPATLDAAAATGGATKGAYVPPGMRAGAERSSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGPVSRVYVAIDQKTSMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRAN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1123 290 Gene3D - 182 290 IPR012677 -
Vra1g1123 290 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 289 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vra1g1123 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Vra1g1123 290 CDD RRM_eIF3G_like 210 285 IPR034240 -
Vra1g1123 290 CDD eIF3G 38 156 IPR024675 -
Vra1g1123 290 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Vra1g1123 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
Vra1g1123 290 PIRSF Transl_init_eIF-3_RNA-bind 1 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vra1g1123 290 SUPERFAMILY RNA-binding domain, RBD 194 289 IPR035979 GO:0003676
Vra1g1123 290 MobiDBLite consensus disorder prediction 179 210 - -
Vra1g1123 290 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Vra1g1123 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 277 IPR000504 GO:0003723
Vra1g1123 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1123 Vra-Chr1 13935850 13937602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1123 4 288 Eukaryotic Initiation Factors Gene Family AT3G11400 68.038 1.50e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1123 K03248 - gmx:100818725 552.362