Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1116 ATGAGATCTTTTGTGCTAAGTCAAGCAAAATATCCCCCAAATACCTACCTTTATCTTAATCAAAGTCATTCATTCAATCGTTCATCAAATACAGTCAATTCCAATGAAAAACCAACAACAGCAGCATGCGTTGGTGGTGCACTTCTTTCAGCTTTCCTGCAGGTTGCATTTGACAGGCTAGCTTCTCCTAAGGTTCTGCACTTCTTTCGTCGAAGGAAGCTCGATGAAGCACTGCTCAGCAAATTGAACATCAAAATGTTGTCCATCAATTCTCTTGCTGATGATGCAGAGCAAAAGCAGTTCCGAGATACACGGATCAAGGCATGGCTTTTTGCTGTCAAAGATGCTGTGCTTGACGCAGAGGACCTCTTGGATGAAATAGACTATGAACTCACCAAATGTGAAGTGGAAGCTCAGTCTGAATCTCAAAGCCTTAGTAAAAAGGTATCAAGTTTCTTCCATTCTACTTTCACTTCATTTAACAGGAAAATTAACTCAGGCTTGAAACAAGTCCTCGAGAAGCTAGAATATCTCTCTAGCCAAAAGGGTGATCTTGGTTTGAAAGAGGCTACTTATTCTGGTCTTCGACCAGGCAGTGTAGCGCAACAAAAATTGCCATCAACTTCCTTGGTGGCTGAAAATGTTATTTATGGAAGAGATGATGACAAAGAAACTATCTTTAATTGGCTCACATATGAAACTGACAATCGTAACCAGTTATCAATACTTTCTATTGTGGGCATGGGTGGAGTGGGTAAGACCACACTTGCCCAACATGTGTACAATGACCCAAGGATGGAGGAGGCTGATTTTAGCATCAAAGCTTGGGTTTGTGTTTCAGATGATTTTGATGTTATGGTGGTGACAACTACAATTCTTGAGGCAATCACTAAATCCATAGATGATAGTAGAAACCTAGAAATGGCTCATGGAAGACTGAAAGAAAAACTGTTGGGGAAAAAGTTCTTTCTCGTTTTGGATGATGTGTGGAATGAAAGACGAGAGAAATGGGAAGCTGTGCAAACTCCTCTTAATTTTGGGGCATCTGGAAGTAAAATTCTTGTAACAACACGTAGTGAGAAAGTTGCTTCTACAATGCGGTCAAGTAAAGTGCACCGCCTAATGCACTTACAAGAAGATCATTGCTGGGATGTTTTTGCAAAACATGCACTCCAAGATGATCATCCTCAATTGAATGCTGAACTGAAGGATATTGGCATAAAGATAGTTAAAAAGTGTAAAGGATTACCTCTAGCCCTGAAAGCAATTGGAAGTCTTCTGCGCACAAAGTCATCTTTTTCGGAATGGGAATGTGTATTGGTAAGCAAGATATGGGACACGCCAATAGAAGAGAATGAAATTATGCCTGCCCTTTTACTGAGCTATCATCACCTTCCTTCGCATCTCAAGAGGTGTTTTGCTTATTTTGCTTTGTTTCCCAAAGATTACAAGTTTGACAAGCAGAGTATAATTTTGTTATGGATAGCTGAAAATTTTCTACAATGCCCCCAACGTAATAAGAGTCCAGAAGAAATTGGTGAATTGTACTTTGATGATCTATTATCAAGGTCTTTCTTTCAACAGTCAAGTGGATTGGAATCATGTTTTGTCATGCATGACCTTCTCAACGATTTGGCAAAATATGTTTGTGGAGATATATACTTCAACTTAGAAGTTGATAAAGCACTGTGTATACCAAAAATGGCTCGTCATTTTTCATTTGCAATCAAAGACGTTAAGTATTTTGACAGTTTACATGAAGCGAAAAGGTTGCGAACATTTATTCCACTTCCTACTTTTGTGATAGTGTCCTATTTCAACGATCCATGGCAATGTAAGATTCCAGTTCATGAGTTGTTCTCCAAGTTTAAGTTCATACACACCTTATCTTTGTTTTGTTGTTCTGGCCTCCTAGAGGTGCCTGACTCAATAGGTGATTTTAAACATCTACGTTCTTTAGACCTTTCCAGGACTGACATAAGAAAACTACCCGATTCAAGTTGTTTGCTCTACAACTTGCAAATACTAAAGTTGAACTTTTGTCTCCTTTTGAAGGAGTTGCCTTCAAATTTGTACAAACTCAACAATTTACGTTGCCTTGAATTTATAGCTACTTCAGTGAGAAAGGTGCCGATGCATATGGGGAAGATGAAGAATCTCCAAGTACTGAGTTCGTTCTATGTTGGCAAAAGTAGCGAATTTGGTATTCAACAGCTCGTAGGGCTCAATCTTCATGGAGGGCTATCAATTGGTAATATGCAGAATATTGTGAATCCCTCGGATGCTTTACAAGTAGATTTGAAAAATAAAAAGCACCTTATAAAGCTAGAGTTAGAATGGAATTCAAACCATATCCCAGACAATCCAAGGAATGAAAAACAAGTACTCGAGTATCTACAACCTCCCAAACACTTAAAGAATTTCTCAATCAGTCACTATGGTGGTACACAGTTTCCAAGTTGGTTATTTGATAATACCTTATCAAACTTGGTGTCACTAAGCTTGATAGGCTGTAAGTATTGCCTGCATTTGCCTCCCCTCGGGCTTTTGCCATTTCTAAAGCAGCTGGTGATTATAGAGCTTGATGGGATAGTGGCTGTTGGTGCTGAGTTCCATGGGAGTAGCTCTTCTTCATTTACATGCTTGGAAACATTGTACTTCTATAATATGAAGGAGTGGGAAGAATGGGATTGTGAAACTGATTTTCCACGTCTTCAACATCTTTCTATAGTACATTGCCCCAAGCTCAAAGGGCTGCCAAAGCAACTTCTTCACGTAAAGCAAATAATTATCTGTGAATGTGAAAGGTTGACCATTACCGGACACAACATGGAATCATCCATAACTAATAATTCTCTTGAAGTGTTGCACATTTATTCTTGTTTGTACATGAATATTCCATTGAGAGTTCGCTACAATTTACTTGTAACACTGGAGATAGATGGAGCCTTTGACTCTCCAATGACTTTTCCTCTAGATTTCTTCCCAAAACTCTGTTCACTCAAACTCGGGTGTTGTAATCTGCAAATGATTTCACAGGATCACACTCATAATCATCTCAAGGATTTGTGTATCAGCAACTCACCACAATTTGAATCATTTCCCAGGGAAGGATTATCTGCCCCCAGGCTGGTAAAATTTAGTATTAAAGAATTGATGAACTTGAAATTATTGCCTAAACGCATGGATATCCTCCTTCCATCTCTTACAGACCTACAAATATTAGATTGTCCACAAGTGGAGTTGTTCTCTGATGGAGGTTTGCCATCAAATCTAAATACCATGGATCTCTCAGCCTGCTCCAAATTTATGGCCTCAATGAAAATGGCTTTGGGAGCCAACAATTCTCTAGAAGTAATGTCTGTTCGAAAATTGGATGTGGAGTCTTTTCCTGATGAAGGTTTCTTGCCTTTCTCTCTTACTTCTTTAGAAATCAGGAACTGTTCAGATCTAAAAAACCTTGACTACAACGGTATCTGTCACCTCTCCTCTCTTCAGAAATTGTTTTTGTTTAACTGCCCCAGCCTCCAATGTTTACCAGAGGAGGGTTTGCCCAATTCCATTTTAGAACTTAAAATTGTTGGCTGTCCATTGCTTGAGCAATGTCAAGGCTAA 3615 0.3906 MRSFVLSQAKYPPNTYLYLNQSHSFNRSSNTVNSNEKPTTAACVGGALLSAFLQVAFDRLASPKVLHFFRRRKLDEALLSKLNIKMLSINSLADDAEQKQFRDTRIKAWLFAVKDAVLDAEDLLDEIDYELTKCEVEAQSESQSLSKKVSSFFHSTFTSFNRKINSGLKQVLEKLEYLSSQKGDLGLKEATYSGLRPGSVAQQKLPSTSLVAENVIYGRDDDKETIFNWLTYETDNRNQLSILSIVGMGGVGKTTLAQHVYNDPRMEEADFSIKAWVCVSDDFDVMVVTTTILEAITKSIDDSRNLEMAHGRLKEKLLGKKFFLVLDDVWNERREKWEAVQTPLNFGASGSKILVTTRSEKVASTMRSSKVHRLMHLQEDHCWDVFAKHALQDDHPQLNAELKDIGIKIVKKCKGLPLALKAIGSLLRTKSSFSEWECVLVSKIWDTPIEENEIMPALLLSYHHLPSHLKRCFAYFALFPKDYKFDKQSIILLWIAENFLQCPQRNKSPEEIGELYFDDLLSRSFFQQSSGLESCFVMHDLLNDLAKYVCGDIYFNLEVDKALCIPKMARHFSFAIKDVKYFDSLHEAKRLRTFIPLPTFVIVSYFNDPWQCKIPVHELFSKFKFIHTLSLFCCSGLLEVPDSIGDFKHLRSLDLSRTDIRKLPDSSCLLYNLQILKLNFCLLLKELPSNLYKLNNLRCLEFIATSVRKVPMHMGKMKNLQVLSSFYVGKSSEFGIQQLVGLNLHGGLSIGNMQNIVNPSDALQVDLKNKKHLIKLELEWNSNHIPDNPRNEKQVLEYLQPPKHLKNFSISHYGGTQFPSWLFDNTLSNLVSLSLIGCKYCLHLPPLGLLPFLKQLVIIELDGIVAVGAEFHGSSSSSFTCLETLYFYNMKEWEEWDCETDFPRLQHLSIVHCPKLKGLPKQLLHVKQIIICECERLTITGHNMESSITNNSLEVLHIYSCLYMNIPLRVRYNLLVTLEIDGAFDSPMTFPLDFFPKLCSLKLGCCNLQMISQDHTHNHLKDLCISNSPQFESFPREGLSAPRLVKFSIKELMNLKLLPKRMDILLPSLTDLQILDCPQVELFSDGGLPSNLNTMDLSACSKFMASMKMALGANNSLEVMSVRKLDVESFPDEGFLPFSLTSLEIRNCSDLKNLDYNGICHLSSLQKLFLFNCPSLQCLPEEGLPNSILELKIVGCPLLEQCQG* 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1116 1204 Gene3D - 461 548 IPR036388 -
Vra1g1116 1204 PANTHER DISEASE RESISTANCE PROTEIN RP 52 1039 IPR044974 GO:0006952
Vra1g1116 1204 Pfam Rx N-terminal domain 49 142 IPR041118 -
Vra1g1116 1204 CDD AAA 217 360 - -
Vra1g1116 1204 Gene3D - 198 372 IPR027417 -
Vra1g1116 1204 Pfam NB-ARC domain 220 462 IPR002182 GO:0043531
Vra1g1116 1204 ProSiteProfiles Leucine-rich repeat profile. 649 670 IPR001611 GO:0005515
Vra1g1116 1204 Gene3D Ribonuclease Inhibitor 968 1203 IPR032675 -
Vra1g1116 1204 PRINTS Disease resistance protein signature 242 257 - -
Vra1g1116 1204 PRINTS Disease resistance protein signature 316 330 - -
Vra1g1116 1204 PRINTS Disease resistance protein signature 413 427 - -
Vra1g1116 1204 PRINTS Disease resistance protein signature 645 661 - -
Vra1g1116 1204 SUPERFAMILY L domain-like 537 927 - -
Vra1g1116 1204 Gene3D - 72 166 - -
Vra1g1116 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 475 IPR027417 -
Vra1g1116 1204 Gene3D Ribonuclease Inhibitor 734 938 IPR032675 -
Vra1g1116 1204 Gene3D - 376 460 IPR042197 -
Vra1g1116 1204 SUPERFAMILY L domain-like 951 1203 - -
Vra1g1116 1204 Gene3D Ribonuclease Inhibitor 609 729 IPR032675 -
Vra1g1116 1204 PANTHER OS05G0414200 PROTEIN 52 1039 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1116 Vra-Chr1 13805818 13810042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1116 236 479 WRKY Transcription Factor Family AT5G45050 26.275 5.87e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1116 - - gmx:100777280 1467.21