Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1108 ATGGCTGCCCTTTCATGTTTCATTCTTCTTTTTGCTCTTTCTCTTCTCACACCCTCTTTTCTTTCTTCCTCTGCACTTCCAGACCCTGAATTGGTTGTTCAAGAGGTACAAAGAAGCATCAATGCCTCAAGGAGAAACTTGGGTTATTTATCATGCGGAACCGGGAATCCCATCGACGACTGCTGGCGGTGCAACCCTAACTGGGAGAACAACCGCCAGAGACTAGCGGACTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGAAGAAACGGCCGAATCTACGAGGTCACAGACTCCGGCAACGACGACGCCGTGAACCCAAAGCCGGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTCATCACGCTAAAGCAAGAGCTTCTGGTGAACTCTTTCAAGACAATCGACGGCAGAGGCGCGAGCGTGCACATCGCCGGTGGGGGCTGCATCACCATACACTACGTAAGCAACGTGATCGTTCATGGGATTCACATTCACGATTGCAAGCCCACCGGGAACACGAACATCAGAGACTCGCCGGAGCACTCGGGGTTTTGGACGAAATCGGACGGCGACGGAATCTCTATCTTTAACTCGAAGCATGTTTGGATCGATCATTGCTCGCTGTCGAATTGTCAGGATGGGCTGATCGATGCCATTCATGGATCCACCGCCATCACGATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACGCAGGACAAGAACATGCAGGTCACCATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCAAGATGCAGACACGGGTATTTTCATGTGGTGAACAACGACTACACACACTGGGAAATGTATGCCATTGGAGGGAGTGCGAACCCCACCATCAACAGCCAAGGAAACAGGTTTCTTGCTCCAGACATTAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCTCCACAGAGTGAGTGGATGAGCTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGGGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACTGTCACTGCTGGTGCACTTACCTGTAGAAAGGGAAACCGTTGCTGA 1215 0.507 MAALSCFILLFALSLLTPSFLSSSALPDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCNPNWENNRQRLADCAIGFGKDAIGGRNGRIYEVTDSGNDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTKSDGDGISIFNSKHVWIDHCSLSNCQDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTVTAGALTCRKGNRC* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1108 404 SMART amb_all 130 327 IPR002022 -
Vra1g1108 404 SUPERFAMILY Pectin lyase-like 39 398 IPR011050 -
Vra1g1108 404 Pfam Pectate lyase 137 321 IPR002022 -
Vra1g1108 404 PANTHER PECTATE LYASE 7 401 - -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Vra1g1108 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Vra1g1108 404 PANTHER PECTATE LYASE 18-RELATED 7 401 IPR045032 GO:0030570
Vra1g1108 404 Gene3D - 55 397 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1108 Vra-Chr1 13667658 13670843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1108 7 404 Polysaccharide Lyase AT5G63180 74.876 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1108 K01728 - gmx:100794814 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1108 1 13667658 13670843 Vra1g1108 1 13667658 13670843 ECH