Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1103 ATGGAAGATCATCAGGGGCAAGAGCAGCAGCAGCAGCAAAAGCAAAAGCAGCAAGAACAGCAACCCAATAGTCCAAATCAACAAGCCTCCGAGAGAACCGAACCGGTGAGGTCAAGATGGACACCCAAGCCAGAACAAATCCTTATTCTCGAGTCCATCTTCAACAGTGGCATGGTTAATCCACCAAAAGATGAAACCGTCAGAATAAGGAAGCTGCTTGAGAAATTTGGAACCGTTGGTGATGCCAACGTCTTCTACTGGTTCCAAAACCGCCGCTCTCGCTCCCGCCGCCGCCAACGCCAGATTCAGGCCACCCTTAACCAGGGTGGCGGTGCAAGTACCAATCCATTTCAACACCACCATCAAAACAACCCTGCTCTTGTTGCAAACATGGCTTTTGGTAGTGGTAGTGCCACTTCCTCTTTCCTTAACCCCTCTTATATACCACCTCGTTCTTCTTCTTCTTCTTCTTCCTGTGCTGCTGCTGCTGCTGAAGAAAGCTTCGATGATTTCTTCCCACCGTCTACTCAAATGGGTTTTCCTGGAATTGATCATCATGCTTCGGCTGCATCATCTTCATCTGTTTTGTACCCTCTTGAAGCTTCCAATTTGAACTATCACTCTGGATTTGGGGGAATTTCAGGACTGATCACAGTGTTCATCAATGGGGTCCCAACAGAAGTTCCAAGGGGGCCAATGGACATCAAAACAGCTTTTGGTGAAGATGGCTTGCAGCATGGTGAAAGCTACTTTGTGGTTTCAAAGCAAACACAAGTATGA 780 0.4756 MEDHQGQEQQQQQKQKQQEQQPNSPNQQASERTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLNQGGGASTNPFQHHHQNNPALVANMAFGSGSATSSFLNPSYIPPRSSSSSSSCAAAAAEESFDDFFPPSTQMGFPGIDHHASAASSSSVLYPLEASNLNYHSGFGGISGLITVFINGVPTEVPRGPMDIKTAFGEDGLQHGESYFVVSKQTQV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1103 259 Pfam Homeodomain 37 97 IPR001356 GO:0003677
Vra1g1103 259 Coils Coil 1 21 - -
Vra1g1103 259 SMART HOX_1 35 102 IPR001356 GO:0003677
Vra1g1103 259 MobiDBLite consensus disorder prediction 100 121 - -
Vra1g1103 259 MobiDBLite consensus disorder prediction 1 42 - -
Vra1g1103 259 PANTHER WUSCHEL-RELATED HOMEOBOX 11 15 242 - -
Vra1g1103 259 ProSiteProfiles 'Homeobox' domain profile. 33 98 IPR001356 GO:0003677
Vra1g1103 259 PANTHER WUSCHEL-RELATED HOMEOBOX 11 15 242 IPR044558 GO:0003700|GO:0048830
Vra1g1103 259 Gene3D - 37 104 - -
Vra1g1103 259 MobiDBLite consensus disorder prediction 96 121 - -
Vra1g1103 259 MobiDBLite consensus disorder prediction 10 35 - -
Vra1g1103 259 SUPERFAMILY Homeodomain-like 32 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1103 Vra-Chr1 13508904 13511148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1103 18 259 Wox Gene Family AT3G03660 47.163 8.46e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra1g1103 Homeodomain 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1103 - - aprc:113866574 308.531