Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1102 ATGAGTAACTCACTACACTTGAGGAATGGTGGTAGTGGATTCAGTGCTGAAATGAATGTTTTTCCTTTAGCTTCTGTTCCTGTTCTTGCTCTTCAGTGTTCAAAAACTTTAAGGTTCATGGGTCATGTTGGAGGAACAGAAATTGAATGTTCTGACATGCCCTTTAAGAATTTGAACTCCTCACTGATCCAAAACCAGGAGAAAGAAGAAGAATCTTTTGGGATTCAGAAAAAGGACTTGTCTTTGAGACCTGGTGAAGAACTTGAAGCTAAGGGTTCTTCATTGGCAGAGAAACTTAGACAGACCAAGCTTTGTGCAAGAGGACATTGGAGGCCAGTTGAAGATGCCAAACTTAAAGACCTTGTTGCACAATTGGGACCTCAAAATTGGAACTCCATAGCAGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAAGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACTGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATCTGTCTTCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTTGATTTGATCTTGCCACTGAATGGAGGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTCCCTCAACAGGAACTAACCTCTCTTTCACTCCCTCTTTAGCCAAACCAACTCCTCTGTCTTTCCTAAACCATTGTCATGTTCAGAATCTCCAAACTTTTGGTGGTTCTCTAATGGGTTTATCTGGAGAAAGCAGAAAAGCACTGAGAGAAGTGAGTTTTGGGATGTATTTTGGTGGTTGGAGGGATTCATTTGAGGTTGGACAGATGGGTGTGGATCAATCTAATTATTCAGAGTCAAACTCATCAGAAGTTTCAGTATCTGAGTCAATTGCCACCAACAACACTACCAATCTCTCAATTTCTGGGGAAAATGAAAACATGGGTAATAACAAGGCCAACAAAATCATATTCATTGACTTTCTTGGAGTAGGAGCTGCATAA 1137 0.4081 MSNSLHLRNGGSGFSAEMNVFPLASVPVLALQCSKTLRFMGHVGGTEIECSDMPFKNLNSSLIQNQEKEEESFGIQKKDLSLRPGEELEAKGSSLAEKLRQTKLCARGHWRPVEDAKLKDLVAQLGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSSVFRRRKPTFQILPPKDFDLILPLNGGSESTISSTIIDESPSTGTNLSFTPSLAKPTPLSFLNHCHVQNLQTFGGSLMGLSGESRKALREVSFGMYFGGWRDSFEVGQMGVDQSNYSESNSSEVSVSESIATNNTTNLSISGENENMGNNKANKIIFIDFLGVGAA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1102 378 SUPERFAMILY Homeodomain-like 107 200 IPR009057 -
Vra1g1102 378 Gene3D - 107 158 - -
Vra1g1102 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 153 IPR017930 -
Vra1g1102 378 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Vra1g1102 378 CDD SANT 161 201 IPR001005 -
Vra1g1102 378 Gene3D - 160 219 - -
Vra1g1102 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Vra1g1102 378 SMART sant 158 206 IPR001005 -
Vra1g1102 378 SMART sant 106 155 IPR001005 -
Vra1g1102 378 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Vra1g1102 378 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Vra1g1102 378 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Vra1g1102 378 PANTHER OS08G0435700 PROTEIN 64 377 - -
Vra1g1102 378 CDD SANT 110 151 IPR001005 -
Vra1g1102 378 PANTHER MYB PROTEIN-RELATED 64 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1102 Vra-Chr1 13489536 13491254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1102 106 226 MYB Transcription Factor Family AT1G69560 76.860 6.01e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g1102 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1102 K09422 - gmx:100791795 331.643