Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1101 ATGGGTGCTGAAATGAATGTTCTTCCTTCACCTCCTGTTACCCTTACTGGTCTCCAGTGTTTCAACATTTTAGGGGTGATGGGTCATGTTGGAGGCATGAAATCTGAAAGTTCTGATATACCTTTTCAGATTTTGAACCCCAAGCGCGTGGAGGAAGAAGAATCTTCTGGGATTGAAGCCACGGGCTTGTCTTTGAAACCTGGTGAAGAGCTTGAAGCTAATAGTTACTCTGCTAAAGGGAAAATCAGACACACTAAGCTTTGTGCAAGAGGACATTGGAGGTCAGCTGAAGATGTCAAACTTAAGGAGTTTGTTGCACGATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAAGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACTGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATGTGTCTTCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTGGATTTGATCTTGCCACTGAATGGAGGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTCCCTCAACAGGAACTAACCTCTCCTTCACTTCCTCTTCAGCAAAATCAACTCCTCTGCCTTTCCTAAAACATTGTCATGTTCAGAATCTCCAAACTTCTGGTGGTTCTCTAATGGGTTTATCTGGAGAAAGCAGGACATCAGCCAGGGATGTGAGTTTCAACAAACATTTTGGTGCTGGGAAAGGTTCATCTGAGACTGGGCACATGGGAAGGGTAATGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCCTCAGAAGTTTCAGAATCAATTGCCACAAACAAGACTACCAATTTACCAATGTACGGGGAAAGTGATAACAGGACCGACATGTTATTCATTGATTTTCTTGGAGTAGGAACTACATAA 1077 0.4253 MGAEMNVLPSPPVTLTGLQCFNILGVMGHVGGMKSESSDIPFQILNPKRVEEEESSGIEATGLSLKPGEELEANSYSAKGKIRHTKLCARGHWRSAEDVKLKEFVARFGPQNWNSMAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVFRRRKPTFQILPPKDLDLILPLNGGSESTISSTIIDESPSTGTNLSFTSSSAKSTPLPFLKHCHVQNLQTSGGSLMGLSGESRTSARDVSFNKHFGAGKGSSETGHMGRVMGVDQSHYSDSNSSEVSESIATNKTTNLPMYGESDNRTDMLFIDFLGVGTT* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1101 358 SUPERFAMILY Homeodomain-like 90 183 IPR009057 -
Vra1g1101 358 PANTHER MYB PROTEIN-RELATED 51 358 - -
Vra1g1101 358 Gene3D - 143 202 - -
Vra1g1101 358 SMART sant 89 138 IPR001005 -
Vra1g1101 358 SMART sant 141 189 IPR001005 -
Vra1g1101 358 ProSiteProfiles Myb-like domain profile. 137 187 IPR001005 -
Vra1g1101 358 CDD SANT 93 134 IPR001005 -
Vra1g1101 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 191 IPR017930 -
Vra1g1101 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 136 IPR017930 -
Vra1g1101 358 Pfam Myb-like DNA-binding domain 142 185 IPR001005 -
Vra1g1101 358 Pfam Myb-like DNA-binding domain 90 136 IPR001005 -
Vra1g1101 358 Gene3D - 90 141 - -
Vra1g1101 358 PANTHER OS08G0435700 PROTEIN 51 358 - -
Vra1g1101 358 ProSiteProfiles Myb-like domain profile. 90 136 IPR001005 -
Vra1g1101 358 CDD SANT 144 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1101 Vra-Chr1 13433671 13435852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1101 89 209 MYB Transcription Factor Family AT1G69560 75.207 9.18e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g1101 Myb_DNA-binding 6.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1101 K09422 - qsu:111993092 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1101 1 13433671 13435852 Vra1g1101 1 13433671 13435852 ECH