Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1099 ATGGGATCTCAAGGTGGGGCAGTTCAAGAGGCAAACACTACTACCCCTTTGGTTAGGCAAGGATCCTTGTACAATCTGACCCTAGATGAGGTGCATAACCAGATTGGGAATTTGGGGAAGCCACTTGGCTGCATGAATCTTGATGAGTTGCTGAAGAGTGTGTATAGTGCTGACATGCAGGATGGCCAAGCTGCTTCAGATTCCTCTCTGAATCCTCAGGGCAGTCTAACTTTGTCAAGGGATCTTAGCAGGAAAACTGTTGATGAGGTGTGGAGAGATATGCAACTGAAGAAGGATGAGAAAACCCAGAAAAGAAAGCCTACACTTGGTGAGATGACTCTGGAGGACTTCTTGGTGAAAGCTGGAGTGTTTGCTGATTCAAATGGAGGTTCCTCACAGCATGGTCATTGGATGCAATACCAGCATTCTTCAGTGCAGCATCAGAATATGGTTGGGGGTTATGTGGCTGGCCATGCCATTCAGCAGCCTTTTGTTCTTGATGCATCATACTCTGAGCCAGCTTCTGTAATAGGAGCTTTATCTGATACACAAACTCCCTGTCGAAAAAGGCTTGCCTCTGGTGATGTGGTAGAGAAAACTGTGGAGAGGAGGCACAAGAGAATGATTAAAAATAGAGAATCTGCTGCTAGATCTCGGGCAAGAAGACAGGCATACACACAAGAACTGGAGATTAAAGTTAAGCAGTTAGAAGAGGAGAATGAAAGGCTTAGAAGACTGAATGAGATTGAGAAGGCATTGCCATCTGTGCCACCACCTGAGCCTAAACAACAGCTACGCAGAACTAGTTCAGCCATCTTTTAA 822 0.4562 MGSQGGAVQEANTTTPLVRQGSLYNLTLDEVHNQIGNLGKPLGCMNLDELLKSVYSADMQDGQAASDSSLNPQGSLTLSRDLSRKTVDEVWRDMQLKKDEKTQKRKPTLGEMTLEDFLVKAGVFADSNGGSSQHGHWMQYQHSSVQHQNMVGGYVAGHAIQQPFVLDASYSEPASVIGALSDTQTPCRKRLASGDVVEKTVERRHKRMIKNRESAARSRARRQAYTQELEIKVKQLEEENERLRRLNEIEKALPSVPPPEPKQQLRRTSSAIF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1099 273 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 201 245 IPR004827 GO:0003700|GO:0006355
Vra1g1099 273 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 271 IPR043452 GO:0003700|GO:0045893
Vra1g1099 273 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 206 221 IPR004827 GO:0003700|GO:0006355
Vra1g1099 273 Pfam bZIP transcription factor 203 248 IPR004827 GO:0003700|GO:0006355
Vra1g1099 273 PANTHER BZIP TRANSCRIPTION FACTOR 2 271 - -
Vra1g1099 273 SUPERFAMILY Leucine zipper domain 203 248 IPR046347 GO:0003700|GO:0006355
Vra1g1099 273 MobiDBLite consensus disorder prediction 249 273 - -
Vra1g1099 273 SMART brlzneu 199 267 IPR004827 GO:0003700|GO:0006355
Vra1g1099 273 Gene3D - 201 253 - -
Vra1g1099 273 Coils Coil 219 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1099 Vra-Chr1 13412935 13419247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1099 1 273 bZIP Transcription Factor Family AT3G56850 55.518 1.97e-96 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra1g1099 bZIP_1 3.1e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1099 K14432 - gmx:100170741 399.823