Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1096 ATGGCGAGGAAGCGAAAACAGCCACCTCGTCCCGCCAAATCGGCAGAGCGCGCTTTCAAACAGCCCCAGTTGAATCTAGAATCAGAGTATAAAGAAGATGAACAATACGAAGAAGAAGAAGAAGAAAGCCGAGAAATTGAAGAAGAATTAGCACCAAGCAATGAAACCTCGAAGCCCCCCTCCACTTCTTCATCCTCTCCTAGCGACGACGAGGAGCCAATCCAGAACCTTCTAGAATCCCTCGGCAAGAATGAGATCGCCAAATTTCTCATCGAGGCCGCCTCCAAGCACCGCGACGTGGCGGACCGGATACGCCGCACCGCCGACGCCGACCCCGCGCACCGCAAGATCTTCGTACACGGCCTCGGCTGGGACACTACCGCCGATACCCTCACTTCCGCGTTCTCCCCCTACGGCGACATCGAGGACTGCAAGGCGGTCGTGGACAAGGCCACTGGCAAGTCCAAGGGGTACGGCTTCGTACTCTTCAAGACCCGTCGCGCTGCGCGCAATGCCCTCCGCGAGCCGCAGAAAAGGATCGGCAACCGCATTGCCGCATGCCAGCTGGCTTCCGTGGGCCCAGTCCAGTCCTCGCCGGCAACGATTTCGACGGCGCCGGGGGCTTCGGATTTCTCGCTGAGGAAGATCTACGTGAGCAATGTGAGTGCGGAATTGGACCCGCAGAGGCTTCTGTCTTTTTTTGCGCAGTTTGGGGAGATTGAGGAAGGACCTTTAGGGCTTGATAAGGTAACTGGGAAACCGAAAGGGTTCTGTTTATTTGTTTATAAGGGTGTGGAGGGTGCAAAGCGGGCGTTGGAAGTGCCGCACAAGAAGTTTGAGGGGCATATTTTGCACTGCCAGAAGGCAATTGATGGTCAGAAGCAACAGCGAGTGGGGGTGGTGCAGGGTAGTTCTCAGAATGGTGGGTATGTTGGTATGGGGGCAGTGCCAATGCCGGGGCACTTGATGGCTCCGGCGGGGCCAGCGGTAGGAGGAGGCGTTGCAGGGACGGCGGTGCAACCGGTTAATCCGGCAGTTGGGCAGGCACTGACGGCATTGCTGGCATCTCGGAGTGCCGGGTTGCAATTGAGTGGGTTCTTGGGTATTGGGTCACCGGGGACGAACACTGGCGGTTATGTCGGACAAGGCAGTGTGAATCCCGGGGCTGTTGCTGTTGGTGGGTATGGGAATCAAGTAGCGTTGCCAAGTTCATATGCAAGCCAGCAGCAGGTGGGGATAGGTGGATCTGGAAGAGTGCAGCAGCCTCATGGTGTGGGACAGTATGGTGGCGTTGTGCCTTACATGGGTCACTAG 1314 0.5715 MARKRKQPPRPAKSAERAFKQPQLNLESEYKEDEQYEEEEEESREIEEELAPSNETSKPPSTSSSSPSDDEEPIQNLLESLGKNEIAKFLIEAASKHRDVADRIRRTADADPAHRKIFVHGLGWDTTADTLTSAFSPYGDIEDCKAVVDKATGKSKGYGFVLFKTRRAARNALREPQKRIGNRIAACQLASVGPVQSSPATISTAPGASDFSLRKIYVSNVSAELDPQRLLSFFAQFGEIEEGPLGLDKVTGKPKGFCLFVYKGVEGAKRALEVPHKKFEGHILHCQKAIDGQKQQRVGVVQGSSQNGGYVGMGAVPMPGHLMAPAGPAVGGGVAGTAVQPVNPAVGQALTALLASRSAGLQLSGFLGIGSPGTNTGGYVGQGSVNPGAVAVGGYGNQVALPSSYASQQQVGIGGSGRVQQPHGVGQYGGVVPYMGH* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1096 437 CDD RRM_RBM24_RBM38_like 214 289 - -
Vra1g1096 437 Gene3D - 204 315 IPR012677 -
Vra1g1096 437 PANTHER UBP1-ASSOCIATED PROTEIN 2A 15 412 - -
Vra1g1096 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 15 412 - -
Vra1g1096 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 182 IPR000504 GO:0003723
Vra1g1096 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Vra1g1096 437 Gene3D - 23 201 IPR012677 -
Vra1g1096 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 303 IPR000504 GO:0003723
Vra1g1096 437 CDD RRM_RBM24_RBM38_like 115 190 - -
Vra1g1096 437 MobiDBLite consensus disorder prediction 1 73 - -
Vra1g1096 437 SMART rrm1_1 215 287 IPR000504 GO:0003723
Vra1g1096 437 SMART rrm1_1 116 188 IPR000504 GO:0003723
Vra1g1096 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 207 IPR000504 GO:0003723
Vra1g1096 437 SUPERFAMILY RNA-binding domain, RBD 107 196 IPR035979 GO:0003676
Vra1g1096 437 SUPERFAMILY RNA-binding domain, RBD 208 312 IPR035979 GO:0003676
Vra1g1096 437 Coils Coil 29 56 - -
Vra1g1096 437 MobiDBLite consensus disorder prediction 54 73 - -
Vra1g1096 437 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1096 Vra-Chr1 13379924 13383599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1096 210 289 C2H2 Transcription Factor Family AT2G19380 33.750 4.92e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1096 K12741 - qsu:112025393 423.705