Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1091 ATGGGGAGCAGAAAGGAAGAAGAGAAGAATGAGAAAATTATCAGAGGTCTAATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAACAGCTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAGTTCACTTCGCAAGAAGTCGATGCCCTTCAAATTGGGGGTAACCAGCGTGCAAGGGAAATATACTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAATAAGGGAATTTATAAAGAGTGTATATGTGGATGGAAGATATGCTGCAGTGAAGTCTTCAGAAAAGCCCCCAAGAGATGCACAGAGCCCTGGAATTCATGAAGATGAGGTTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAGTATGAGGATCGGAAGTATGGAAAACAAGCAGCTGCACTCACCAGGAAGCCTGGTTCAGATAAAGCTCGATACGAAGGGAAAATATCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGACTTTTCTGTTTTTAGTGGTGGTGAACAATTCAAATCTGATGTGCAGTCTCCCAATTCCTATAAAGATATTAAGATTAGCAGTCCATCCTATCAAAGGCGCTCTGGTTCCAGTTCGAGTGAAGATGTGTGGTACCAAGCAAGAAATGCATCTCTGGAAACTAATGTCAATGCCAAGAGAGATGGAAATGGATTTCGTCCTCCACAGATAACTACATCAGAACAATCAGGAGACAACAAAATTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATCCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACCTCTCCAAGGCACCATTTGAATCAGCAGTGGCGGCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCCTTTTCATCTGCAGTTCCATTTTTCAATGACAATCAACTTCCTCAAGCATCCCAACCTGCATCCATTGAATTTTTTGCGGATCTCTCTGAGAAGCCTTCCACTGTAAACTCAAATGAAAAGGCACTGGATTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATATGCCTCAGAGCACCTCATCCACTGCACAAATGGAAATTCCAGCTACTGTACCCTTAAGTGCTAAATCTTTACGAGAAAGATTTGATCCGTTTTCCACTTCAAATGCAAACACACAATGGCCATCTTTTGAATTTTCAAGTGGCAGTATACATTCTTCACTTACATCTAATTTATGGGATGCTGGTGTGTGGAGTAGTGAAGAACAAGTTTCCGCTATATCAGCAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTGGCCATCATCCTGTGGATGCCCTAAGTCAAGGATTACAATTGCACAATTTTCCCTCAGCTGATAATCAAATTTTGGGATTAAGAGAGTCTGAGGGGTCCAAAAGTGATGGCGTTAAAGGCATTGTCCCTGTTGATGCATTTGAAAATCATGACATCCCATCGCACGTCAATGATTCAGAATATCCACCATCCATGCTTCCTTCAATGGGAGACATTGAACCTATTGGAACGAAATGTAAATCAACTAATCCATTTGATTTTCCTCATGAATCTGATGTAGCTCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCAGATGCCCTGTTTCCAACCTCCTTCCATAGTGGTATAGCTGAATCTTGGCTTCCCCAAAACACGGTGACCCCTTTTATTTCCTCTTCTGGAGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCAGGTTCTCAAATACAGAACATCCAGACACCAGAACCAGTTGCTTCGTTTGGGGGAAATCCTTTTGCATAG 2061 0.4173 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQIGGNQRAREIYLKNWDFQRQRLPDNSNVDKIREFIKSVYVDGRYAAVKSSEKPPRDAQSPGIHEDEVRRASSYHSYSQSPPYDYQYEDRKYGKQAAALTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVFSGGEQFKSDVQSPNSYKDIKISSPSYQRRSGSSSSEDVWYQARNASLETNVNAKRDGNGFRPPQITTSEQSGDNKISSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKAPFESAVAASQAPTVDLFQSSFSSAVPFFNDNQLPQASQPASIEFFADLSEKPSTVNSNEKALDLSVPKNEGWATFDMPQSTSSTAQMEIPATVPLSAKSLRERFDPFSTSNANTQWPSFEFSSGSIHSSLTSNLWDAGVWSSEEQVSAISANTQPWNAFEDSGGHHPVDALSQGLQLHNFPSADNQILGLRESEGSKSDGVKGIVPVDAFENHDIPSHVNDSEYPPSMLPSMGDIEPIGTKCKSTNPFDFPHESDVAHNNMFLDMSSLQDALPDALFPTSFHSGIAESWLPQNTVTPFISSSGEGGLSFMAVQSPGSQIQNIQTPEPVASFGGNPFA* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1091 686 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Vra1g1091 686 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Vra1g1091 686 MobiDBLite consensus disorder prediction 230 261 - -
Vra1g1091 686 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Vra1g1091 686 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Vra1g1091 686 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Vra1g1091 686 MobiDBLite consensus disorder prediction 274 300 - -
Vra1g1091 686 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Vra1g1091 686 MobiDBLite consensus disorder prediction 285 300 - -
Vra1g1091 686 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD14-RELATED 1 686 - -
Vra1g1091 686 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Vra1g1091 686 MobiDBLite consensus disorder prediction 134 148 - -
Vra1g1091 686 MobiDBLite consensus disorder prediction 126 162 - -
Vra1g1091 686 CDD ArfGap_AGFG 11 123 - -
Vra1g1091 686 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Vra1g1091 686 PANTHER ARFGAP/RECO-RELATED 1 686 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1091 Vra-Chr1 13271502 13278576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1091 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 2.89e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1091 K15044 - gmx:100788316 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1091 1 13271502 13278576 Vra1g1091 1 13271502 13278576 ECH