Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1089 ATGACAAAGAAGCCGAAGCAGCGCCCTGTACCGGTGGAAGATCCTTCAACTCCTTCCTCCTCCGAATCTGAGGAAGATGATGACCGAACGCATTCTTCTCAACAGCATGCAGCAGCAGCACAGGTTTCTTCCTTTGAAGAGGAAGATGATTCTTCAGAAGAAGAAGACGAGAAGCAAGGTTCCATTCTCCCTGCTTCTGCAAACCATCCCTCCAAGCCTCACCCCAAGTCCTCCTCCTCTGAATCCGAATCCGACACTGGCACCGAACCAGCTCGAGTCAAACCCAAACCCAAGCCCACGGACCTACCCCAGCCCCAGCCGCAGCCCAAGGTCCAGGCCCAGCGTTCCTCCACGCGGGCGAAGCTGGGAGCCAAGCGCCCCGCCGACGCAACTGAGCCGAAACGCACGAAAAAGAAACCAGCTGAGGCTCCTTCTCCTTCTGTTGCTAACGACGAAACGGAGGAGGATGGGAAGAAGTCCGGCGGGCAAGCAAAGGTGTTGTTCCAGAGGATCTGGAGCGAAGAAGACGAGCTCAGCCTTCTTAAGGGCATACTTGAGTTCATCTTAAAGACCGGACAAGAGCCTTTGTATCATTGGGATGTCAACGCTTTCCCCAACTTCATTAAAAAGTCACTACACGTGGAGTTTTCCCGCCATCAGCTGAGGGCGAAGATTCAACGGATTAAGAAGAAGTTCGAGACTTATGAGGAGAAAAAGAAGAAAGGGCTTGCGCGTCCGTGGTTGATGTCACCTCACGACCGGGCCTTGTTTGCATTGTACAAGAAAATTTGGGTTGAATGGCCCGACGGACTGAGGGGAAAGCCCGAGCCTCTTGTTACCAAGACTCAAAAGAAGGAATCAGAAGCCAAGGCCGAAGTTCCGTCGCAGCCAGAGTTGCTGGCGCCTGAAAGTGGTGACGTGAGTTTGCTTTACAGCAATATTTCTTGTTTTAAAGAGCTGGATGAGGATGAGATGAAGAGAGGACTTACTTTGATTGGAGAATCCAAGAGGAAGGAATTAGAGAGAAGATGGAAAGTGTTGCAATATTCTGAGATGGAACTACTTGCGAATCGCACTCTACTGATGGGGGAGCAGATTAAGTTGGTATCTGAAGCCCTACAGTCATCCAACAATTAG 1137 0.5101 MTKKPKQRPVPVEDPSTPSSSESEEDDDRTHSSQQHAAAAQVSSFEEEDDSSEEEDEKQGSILPASANHPSKPHPKSSSSESESDTGTEPARVKPKPKPTDLPQPQPQPKVQAQRSSTRAKLGAKRPADATEPKRTKKKPAEAPSPSVANDETEEDGKKSGGQAKVLFQRIWSEEDELSLLKGILEFILKTGQEPLYHWDVNAFPNFIKKSLHVEFSRHQLRAKIQRIKKKFETYEEKKKKGLARPWLMSPHDRALFALYKKIWVEWPDGLRGKPEPLVTKTQKKESEAKAEVPSQPELLAPESGDVSLLYSNISCFKELDEDEMKRGLTLIGESKRKELERRWKVLQYSEMELLANRTLLMGEQIKLVSEALQSSNN* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1089 378 PANTHER STOREKEEPER PROTEIN 37 375 - -
Vra1g1089 378 MobiDBLite consensus disorder prediction 278 292 - -
Vra1g1089 378 Pfam Protein of unknown function, DUF573 168 264 IPR007592 GO:0006355
Vra1g1089 378 Coils Coil 218 238 - -
Vra1g1089 378 PANTHER BNAANNG10740D PROTEIN-RELATED 37 375 IPR007592 GO:0006355
Vra1g1089 378 MobiDBLite consensus disorder prediction 275 300 - -
Vra1g1089 378 MobiDBLite consensus disorder prediction 1 161 - -
Vra1g1089 378 MobiDBLite consensus disorder prediction 71 86 - -
Vra1g1089 378 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1089 Vra-Chr1 13251345 13253899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1089 121 372 GeBP Transcription Factor Family AT1G61730 29.412 7.98e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vra1g1089 DUF573 6.6e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1089 - - vun:114182157 451.825