Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1084 ATGGACAGGCTCATAAAGTTAGAGCCTTCAAACACAGTCCTAATAAGAGTAGAACCAGGCCAAAAGTGCCAAGGCAAAATCACCTTACACAACGTCATGCACACAATGCCAGTGGCCTTCAGGCTTCAACCCCTCATCAAAACTCGTTACCTAGTTAAGCCCCACTCAGGTATTATCTCCCCCTTAGCCACGCTCACCCTAGAAATCACCTATCATACACCCTCCACCACCACCCTCCCCCATTCCTTCCCTCACTCCAACGACTCCTTCCTCCTACACAGCGTCTTGGTTCCAGGAGCCGCCATCAGAGAACCCTCCTCCATGTTCGACGCTGTTCCCTCCGACTGGTTTAAGAAAAAACAAGTCTTCATTGACAGCGGCATAAGGGTCATGTTTTTAGGGTCACACATTCTGGCCCAGTTGGTCTCGCTCGGAGAAATCGATGAGGTCAGGGAAGCTCTGGAGAGAAGCGACCCTTCATGGAGAATGGTAAACAGCACCGACCCACATGGCCAGACATTGCTCCACTTGGCGGTCGCGCAGGGAAGAGCTGACCTCGTTCAACTGCTTCTGGAGTTCGAGGCCGATACCGAGACAACAAACCGTTCTGGGTTGACCCCACTTGAGGCTGCAGCATCGTGTAACGAAACATTGATCGTGGAGCTTCTTCTGGCCCGAAGGGCCAACACGGAGCGAGCCGAAATGGCCATGTTTGGGCCGATTCATCACGCGGCCAGAGGAGGACACGTGGAGGTCCTGAGACTGCTCTTGCTCAAAGGCGCCAAAGTGGACTTGCTCACGAAAGACGGCAACACTGCTTTGCACGTTGCAGTTGAGGAGCGTCGAAGAGACTGTGTTAGACTTCTTCTAGCCAACGGTGCCAGAACTGACCTTAAGAACGCAAGAGAAGGTGACACCCCTTTGCACACGGCAGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTCCTTCTGCAAAAGGGCAATGCCAACAAGGACGTTCGAAACGCGCAAGGCAAAACCGCCTACGACGTCGCGGTGGAGAACGGCCACGAGCGCCTCTTCGACGCCCTGAGTCTGGGCGACAAGCTGTGCACGGCTGCAAAGAAAGGCGAAGCGAGAACCATCCAGAAGCTTCTGGAGAACGGCGCGGACCTTAACGGGAGGGACCAGAACGGTTGGACCGCGCTGCACCGGGCCTCGTTCAAAGGGCGAATCGACGTGGTGAAGGTTCTGGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACGAAGAAGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCACGCAGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCGGACGTTGAGGCGAGGACTAGGAAGGGCGTGAGTGCGTTGCAGATAACAGAGTCGTTGAACTACGTGGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAGAGTCTCTGCTTTTGGTGCAATTGCTTTTGGGAGTAAGATGATGGAAGGTGGGGGTGTTGTGAAGAAGAGGAGGGGTGGTGGTGACAGGGGTAATATCAGAGGGTTGAAAAATGGTGCTGGTTTTGGTCGTTCATTGGCTCTGGCTGTGCTCTAA 1620 0.5475 MDRLIKLEPSNTVLIRVEPGQKCQGKITLHNVMHTMPVAFRLQPLIKTRYLVKPHSGIISPLATLTLEITYHTPSTTTLPHSFPHSNDSFLLHSVLVPGAAIREPSSMFDAVPSDWFKKKQVFIDSGIRVMFLGSHILAQLVSLGEIDEVREALERSDPSWRMVNSTDPHGQTLLHLAVAQGRADLVQLLLEFEADTETTNRSGLTPLEAAASCNETLIVELLLARRANTERAEMAMFGPIHHAARGGHVEVLRLLLLKGAKVDLLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNAREGDTPLHTAAAAGDESMVKLLLQKGNANKDVRNAQGKTAYDVAVENGHERLFDALSLGDKLCTAAKKGEARTIQKLLENGADLNGRDQNGWTALHRASFKGRIDVVKVLVERGVEVDAKDEEGYTALHCAAEAGHADVTEFLVKKGADVEARTRKGVSALQITESLNYVGITRVLVNGGASRENSDRVSAFGAIAFGSKMMEGGGVVKKRRGGGDRGNIRGLKNGAGFGRSLALAVL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 240 268 IPR002110 GO:0005515
Vra1g1084 539 Pfam Ankyrin repeats (3 copies) 364 454 IPR002110 GO:0005515
Vra1g1084 539 Pfam Ankyrin repeats (3 copies) 240 299 IPR002110 GO:0005515
Vra1g1084 539 Pfam Ankyrin repeats (3 copies) 300 357 IPR002110 GO:0005515
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Vra1g1084 539 ProSiteProfiles Ankyrin repeat region circular profile. 240 264 - -
Vra1g1084 539 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Vra1g1084 539 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 514 - -
Vra1g1084 539 Gene3D - 358 491 IPR036770 -
Vra1g1084 539 Gene3D - 237 302 IPR036770 -
Vra1g1084 539 PRINTS Ankyrin repeat signature 304 319 IPR002110 GO:0005515
Vra1g1084 539 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Vra1g1084 539 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 133 IPR000535 -
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 203 235 IPR002110 GO:0005515
Vra1g1084 539 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Vra1g1084 539 SMART ANK_2a 203 232 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 391 420 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 424 453 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 457 486 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 337 387 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 236 265 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 269 298 IPR002110 GO:0005515
Vra1g1084 539 SMART ANK_2a 303 333 IPR002110 GO:0005515
Vra1g1084 539 ProSiteProfiles Ankyrin repeat region circular profile. 269 300 - -
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Vra1g1084 539 Gene3D - 303 357 IPR036770 -
Vra1g1084 539 SUPERFAMILY PapD-like 2 142 IPR008962 -
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 303 327 IPR002110 GO:0005515
Vra1g1084 539 Pfam Ankyrin repeats (many copies) 164 209 IPR002110 GO:0005515
Vra1g1084 539 Gene3D - 130 236 IPR036770 -
Vra1g1084 539 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Vra1g1084 539 ProSiteProfiles Ankyrin repeat region circular profile. 170 202 - -
Vra1g1084 539 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 514 - -
Vra1g1084 539 ProSiteProfiles Ankyrin repeat region circular profile. 303 327 - -
Vra1g1084 539 SUPERFAMILY Ankyrin repeat 164 488 IPR036770 -
Vra1g1084 539 Gene3D Immunoglobulins 1 129 IPR013783 -
Vra1g1084 539 ProSiteProfiles Ankyrin repeat profile. 363 390 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1084 363 467 Ion Channels AT4G32500 33.333 7.78e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1084 - - gmx:100782444 831.632