Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1079 ATGGATCACTACAAGGTTCTCGGCTTGCACCGAACCGCCACCAAGGAGGAAATCAAAACCGCTTTCAAGAAACTAGCGTTTCAGTTCCACCCGGACAAGCATTCCCAATCGCCGAGGGCCATTAGGGAAAATGCCACAATTCGATTCAAGCAGGTATCGGAGGCCTACGAGGTCCTTATGGATGACCGAAAGCGAGCCGACTACAATTTCCGGCGGAGCTCTGGCAACCACGGCGGAAACAACCCCTATTCCCATTACAGCTATGGATACAGTAGGAGCGGGAGCAGGTACGAGTACAAACCTGGGTCTGGTGCTGGTGGTGGCTTAGCTTCCAATTTTGAAATGGCTCTCCGAATTTTGACGGGGCGGTCTTCACTTCTCTATCTCGGCTTCGCAGGGGCTATATTATGTGGGATAGTTGTCATTGATGCAAGCCGAGAATCCTTATGGAGAATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATTGAGAAAGCCAAAGCGTATAGAGAAGATAACATGAAGGAACGTCCTTGA 546 0.4927 MDHYKVLGLHRTATKEEIKTAFKKLAFQFHPDKHSQSPRAIRENATIRFKQVSEAYEVLMDDRKRADYNFRRSSGNHGGNNPYSHYSYGYSRSGSRYEYKPGSGAGGGLASNFEMALRILTGRSSLLYLGFAGAILCGIVVIDASRESLWRMQNSGKSFEEAMKSIEKAKAYREDNMKERP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1079 181 CDD DnaJ 2 61 IPR001623 -
Vra1g1079 181 SMART dnaj_3 1 64 IPR001623 -
Vra1g1079 181 Gene3D DnaJ domain 1 119 IPR036869 -
Vra1g1079 181 Pfam DnaJ domain 2 69 IPR001623 -
Vra1g1079 181 PANTHER CO-CHAPERONE PROTEIN DJLA 1 164 - -
Vra1g1079 181 PANTHER CHAPERONE PROTEIN DNAJ 72 1 164 - -
Vra1g1079 181 SUPERFAMILY Chaperone J-domain 1 91 IPR036869 -
Vra1g1079 181 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Vra1g1079 181 PRINTS DnaJ domain signature 4 22 IPR001623 -
Vra1g1079 181 PRINTS DnaJ domain signature 22 37 IPR001623 -
Vra1g1079 181 PRINTS DnaJ domain signature 44 64 IPR001623 -
Vra1g1079 181 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1079 Vra-Chr1 13096221 13100960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1079 3 73 C2H2 Transcription Factor Family AT1G74250 39.437 1.76e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1079 - - gmx:100782769 286.189