Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1078 ATGGCACGTTCCATCTATAACACCAAACCATTACACAGGAAACTACTTCTCCTCAACATATCCTTCATTTTCCTCGTCTGTCTCTTCCTCAATGCCTATCTCCACCCTCCCAGTTCCGATGTTGATGCCTCCACAAATGTGTTCAACCATGCCAGAATGCTCAGCGACATCAGTGTTGATGGTTGCTCTGATCTTCACAAGTACTTGGATAATGACTCCAAGTGCTTATATGTTAAATCCCATGCTCAGTGCAGGTCAAAAGGGTATATAAATTATCTGCAGATCTTTTACTGCAGCTTTGGACATTCCCCATTTTTGGGTCATGCCCTGCTTATACTGTGGCTTGTGATTTTGTTTTATCTTTTGGGAGATACAGCTTCAAATTACTTTTGTAGTAACCTGGAAGGTCTGTCTAATATCTTGAGACTATCCCCCACCATAGCTGGGGTAACCTTGCTTTCTCTCGGAAATGGTGCCCCGGATTTTTTTGCCAGTGTTGTTTCTTTCACAAGATCCAATGACGGTGCAGTTGGCCTGAATAGCATTCTGGGAGGGGCGTTTTTTGTGTCCAGTGCTGTCTTGGGGATCATAAGTTTTCTTGTTAGTGCAAATGAAACTGCAATTGACAAGGCCAGTTTCATTAGAGATGTCATTTTCTTCCTTTTCTCACTTTTCATTCTCCTTGTCATCATTTCTATCGGGAAAATCAGCTTGTTGGGTTCAATTTTTTATGTTTCCATTTACTTCCTGTATGTGTGTGCTGTGTCTGCAACACATTTCATCTATGGAGGGGACAGGACAGAAGGGGAACTTGGCTCATCTTCTGATGACTTGACTGAGTCAGGCGTGCCCTTGCTAGGCTGTGTTGATGATGAGAAACCAAATGGATCAAACAAAGAGGTAATGGAAGATCAAGGGGAGAAGCATCATCAGGGTTTTGGTAATAATTCTTTTGACTTTACTTACTTGAGCAAGTTTCTACATGTACTAGAGCTACCTCTTTGCTTGCCAAGAAGGCTTACTATACCAGTTGTGAGTGAGGAAGGTTGGTCAAAGCCATATGCTGTTATATCTGTCACATTGGCACCAGTGTTATTTTCAGCTCTTTGTAACACCCAAATGGAAAATGAGAGTTCAAGGAGTAGTCTTGTTTCATACTTGACAGCTGCTTTGATTGGCATTGTTTTGGGGAACATGGCATGTGTGACAACCAAGAGCACTAGTCCACCCAGAAAGTGCTTGTTTCCTTGGCTAGCTGGGGGCTTTTCCATGAGTGTAACATGGACTTACATCATTGCTGAGGAACTTGTTTCCCTCTTGGTTGCAATTGGGAATGTGATAGGAGTTAGTCCTTCAATCCTTGGACTAACTGTCCTAGCTTGGGGTAATTCTCTAGGAGATTTGATAGCCAATGGTGCAATGGCCAAGAATGGAGGAGCTGATGGGGCCCAGATAGCTGTCTCTGGTTGTTATGCAGGCCCTATGTTTAACATTTTGATGGGCTTGGGCTTACCTCTTCTACTCTCAGCATGGTCTGAATACCCAGAGTCTTATGTGATTCCCAAGGACCCTTCTCTTTTTGCAACACTTTTGTTCTTGATGGGAGGGGTGCTTTGGGCCCTTGTGATATTGACAAAGAAGAATATGAAGCTTGATAAGTCATTGGGAATTGGGCTCTTGACCATTTACCTCTGCTTTTTGTTTATAAGGATGGTCATTGCAATTGGTGTTATTAAATTTTAA 1743 0.4269 MARSIYNTKPLHRKLLLLNISFIFLVCLFLNAYLHPPSSDVDASTNVFNHARMLSDISVDGCSDLHKYLDNDSKCLYVKSHAQCRSKGYINYLQIFYCSFGHSPFLGHALLILWLVILFYLLGDTASNYFCSNLEGLSNILRLSPTIAGVTLLSLGNGAPDFFASVVSFTRSNDGAVGLNSILGGAFFVSSAVLGIISFLVSANETAIDKASFIRDVIFFLFSLFILLVIISIGKISLLGSIFYVSIYFLYVCAVSATHFIYGGDRTEGELGSSSDDLTESGVPLLGCVDDEKPNGSNKEVMEDQGEKHHQGFGNNSFDFTYLSKFLHVLELPLCLPRRLTIPVVSEEGWSKPYAVISVTLAPVLFSALCNTQMENESSRSSLVSYLTAALIGIVLGNMACVTTKSTSPPRKCLFPWLAGGFSMSVTWTYIIAEELVSLLVAIGNVIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGADGAQIAVSGCYAGPMFNILMGLGLPLLLSAWSEYPESYVIPKDPSLFATLLFLMGGVLWALVILTKKNMKLDKSLGIGLLTIYLCFLFIRMVIAIGVIKF* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1078 580 PANTHER CATION/CALCIUM EXCHANGER 1 13 580 - -
Vra1g1078 580 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 13 580 - -
Vra1g1078 580 Pfam Sodium/calcium exchanger protein 418 571 IPR004837 GO:0016021|GO:0055085
Vra1g1078 580 Pfam Sodium/calcium exchanger protein 113 254 IPR004837 GO:0016021|GO:0055085
Vra1g1078 580 Gene3D - 355 573 IPR044880 -
Vra1g1078 580 Gene3D - 143 274 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1078 Vra-Chr1 13089970 13091712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1078 36 578 Antiporters AT5G17860 51.273 8.12e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1078 K13754 - gmx:100818583 957.207