Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1063 ATGGAAGCAGAAGAACACTTTCAACTTCCTCGTCTATCTCACGAAGTTGCAAATTCTCCGGTTCAAGGAATGGAAAGCGTGGTGGCAACGGTTAGCGGTTACCACGGTTCCGAGCGGTTCGATCTCATCAAGCTGATTTCATATGCCGGCGCCAATTACGTTGGCACAATGTCAAAATCGATAACGCATTTGGTGTGCTGGAAATTTGAAGGAAAGAAATACGATATTGCGTTGAAGTTTAGAATACCTATAGTGAACCACCAATGGATTGAGGACTGCATAAAGGAAGGGAGGCGTGTTCCAGAAGATTCTTATACCTTGCAGAGTGGACATGAAGTAGGACGATTGTTACTGGAAGTTCCCCTCACTGTTCGGGCCAGTAGGTTGACAAAGGAAAAAATCGTCAGTGACAAGTTACATGATACTGGGACTGAAAGGCAAAATCCTAACTTCGGTTCTGGAATTTCAATAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGATGAATCAACTTCATATTCGTCTAGACTGTCAAGGAAAGGAAAAAGAAACATTTGTAACGGTAAGGGAGTCATTACTCGAGCCGGACCTTCTCGTAAAGGAAGAAGACTTACGAGAAATCTTGTTGATGATGTGGTGTTGGCTCCTTCAATTTTGGATTTAATAAGCCCAGATTACCACCTTTTTAAAGCGGATAGACTACAAACAGACGCTGAAGCGACATCTAGCCTTTCTGGTGGTGTCAATAATAACACTATTCTACAAAATAGTGAAGGACCTAATGCTGGATTAAGTACTGAAAGTAGAATTATCGATGGTGATTCAGATGATATTGAACAGATCAAAGATTCAGTTCATATATCTACTCTTAGAAATTCAACTTTGTTTGTAGAAGATGCCCTACGCGTGCCACAAACATCAATAGATTTATGCTCTAGTGATGATGAAAAATTCACCGATGGTGATCAGGTTGATAATGGCGCTGGCTTACCTACTTCAACAGAGATGTCATGTGTTATATGTTTCACAGATTTCAGCACAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGACCATAGGACTTCAATGAGAAAAAAATCAACTTGCCCTCTGTGCAAGGCAAGTTTTGTGATGATTAAGAAAGTCGAGCATGCAGCCACTACGGATCAAAAAGTATACTCCCAGACAATCCCATGTAACAATTCAGCCTCAGAAATTTTTATCCCCATGGATCAAGAATTACCGCATACTACCTTTGAGTCTACACAAACGGGAGCTTGTGTAATTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAATTGTGATATTTGCCAAATTCAAAAAATTCATTCATATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGCAAGGAACTTCGGATGCTTTATCGCACTAATCACTATTAG 1479 0.4104 MEAEEHFQLPRLSHEVANSPVQGMESVVATVSGYHGSERFDLIKLISYAGANYVGTMSKSITHLVCWKFEGKKYDIALKFRIPIVNHQWIEDCIKEGRRVPEDSYTLQSGHEVGRLLLEVPLTVRASRLTKEKIVSDKLHDTGTERQNPNFGSGISITYVLEDSCLMKKHDESTSYSSRLSRKGKRNICNGKGVITRAGPSRKGRRLTRNLVDDVVLAPSILDLISPDYHLFKADRLQTDAEATSSLSGGVNNNTILQNSEGPNAGLSTESRIIDGDSDDIEQIKDSVHISTLRNSTLFVEDALRVPQTSIDLCSSDDEKFTDGDQVDNGAGLPTSTEMSCVICFTDFSTTRGILPCGHRFCFPCIQSWVDHRTSMRKKSTCPLCKASFVMIKKVEHAATTDQKVYSQTIPCNNSASEIFIPMDQELPHTTFESTQTGACVICRGREPEDLLENCDICQIQKIHSYCMDPPLRPWTCNHCKELRMLYRTNHY* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1063 492 SMART ring_2 341 385 IPR001841 -
Vra1g1063 492 Pfam twin BRCT domain 27 89 IPR001357 -
Vra1g1063 492 SUPERFAMILY FYVE/PHD zinc finger 429 483 IPR011011 -
Vra1g1063 492 ProSiteProfiles Zinc finger RING-type profile. 341 386 IPR001841 -
Vra1g1063 492 SUPERFAMILY RING/U-box 340 393 - -
Vra1g1063 492 SMART BRCT_7 21 97 IPR001357 -
Vra1g1063 492 ProSiteProfiles BRCT domain profile. 16 107 IPR001357 -
Vra1g1063 492 Pfam Zinc finger, C3HC4 type (RING finger) 341 385 IPR018957 GO:0046872
Vra1g1063 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 485 IPR013083 -
Vra1g1063 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 406 IPR013083 -
Vra1g1063 492 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Vra1g1063 492 Gene3D BRCT domain 20 112 IPR036420 -
Vra1g1063 492 PANTHER F5A8.9 PROTEIN 20 489 - -
Vra1g1063 492 SUPERFAMILY BRCT domain 18 108 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1063 Vra-Chr1 12842419 12848052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1063 61 113 Core DNA Replication Machinery Family AT4G02110 50.000 7.45e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1063 - - vra:106765083 1010.36