LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra1g1048	ATGGCAACTCCAAGTTTCCCTAGATTCACGTACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTATGGTTTCACTGGTAATCTCTATAAAGCTCTCTGTGACAGGGGAGTTCACACTTTCATCGATGATGACAAACTTCAAAGCGGAGACGAAATCACACCAGCACTTCTCAAAGCAATTGAAGAGTCTAGGATCGCCATCGTTTTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTCGCAACCATCTTTCACTGCAAGAAGAGTAAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTCAGACATCAGAAAGGTACCTATGAAGAAGCATTGGTTAAGCATCAAAAGAAGTTCAAAGCGCAGAAGGACAAGTTACAGAAATGGAAGATGGCTCTGCGTCAAGTTGCTGACTTCTCTGGCTATCACTTCAAAGATGGGCATGAATACCAGTACGAGTTTATTGGGAAAATTGTTGAACGGGTTTCCAGGGAGATTAATCGTGCTCCTTTACATGTTGCAGATTACCCAGTTGGCCTACTGACACAGGTGCTGCATGTCAAGAAACTTTTGGATGTTGGATCGGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTTGATTGCTGATGATTTTGATAGTTCATGTTTTCTTCAAAATGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCCTCCTTCTTTNTGAAATACTTGGAGAGAAGGACATCGACTTAACAAGTGTACAAAGAGGAATTTCAGTGATACAACAAAGGCTTCGTAGAAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAANAGAAAGCAGTTACAAGCATTTGCTGGAAGATCTGATTGGTTTGGTCCCGGCAGCAGAGTTATCGTTACCACTCGGGACGAACAGGTGCTAAAATGTCATGACATTGAAAGAACTTATGAGGTGAAAGAATTGAATAAGAATGATTCTCTTCAATTGCTTATGTGGAATGCTTTCAAAAGGGAAAAAGTCGATCCAAGTTACGAGGNCGTGTTGAAACGTGCAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTACAAGAATGGGAGTCTGCGATTCAACATTACAAAAGAATTCCAAATAGTGAAATTGTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGAGATGAAGAAAAGAATATCTTTCTTGACATGGCCTGTTGCTTGAAAGGAAGTAGTTTGAAAGAAGTTGAACAGATACTTGGTGTTCTTTATGATAACAACATGAAACATCATATTGGGGTGTTGGTGAAAAAATCTCTCATAAAGGTTGGGCGTGGAAGGTTTAATGCAATTGAAATGCACGACTTGATTGAGGACATGGGTAGACAAATTGACCTGCAAAGCTCACCCAAAGAGGTAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCATTCATGTTTTAAAAGATAACAAGGGAACTAGCGAAACTGAAATCATATGTCTGGATTTGTCTATATCTGAGAAAGAAGAAACAATAGAATGGAATGCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATAATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAACAAGCTTGTGACATGCAAGTTACCTCANAGTCATTTTACNTCATTTGGATTCCTTGGCTCATCAAAGAAGTTCGAGAATCTAACTGTCTTGAATTTTGACAAGTGCAAATTTTTAACACAGACACCCGATATGTCTGATCTCGGAAATTTGGAGGAAGTTTCATTTAAAGGGTGTGAGAGTTTAGTTGAAGTTCACCACTCAATTGGTTTTATGAGTAAACTTAAAATATTGAATGCGGGAGGTTGCAGGAAGCTTATGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAGACTAGAACTTTCATTTTGTCCGAATCTTGAGAAATTTCCAGAAATCCTAGGAAAGATGGGAAACATAAAGTTACTTCAATTGAATGGGCTTCCCATTAAAGAATTCCCACTTTCGTTTGAAAATCTTATTGGACTCGAAGAGTTATCCTTGTCATGTGAAGTTGTTCACTTACCAAGTAGCATTACTACTATGCCTAAATTGTTTAATTTTAGAGCTACTAATTGCAAGGGGTGGCAATGGGTAAAAGCAGAAGATGGTGAAGATAACGTAGGCTCAATGGTTCCTTCAAAGGTAGATTGGTTTTCAGCCTTGTCTTGCAACCTGGATGATGACTTCTTTTCAGCAGGTTTCATGCGGTTGGCACAAGTGTGTGTTTTATTTCTTCGGGACAATAATTTTACACACCTTCCTGAATGCATCAAAGAATTTCACAATCTCTTCTTTCTTGATGTGAGTCATTGCGAGCATCTTCAGGAAATCAGAGGGTTTCCACCAAAATTAGAATATTTCAAGGCAATAAACTGCATATCCTTAACTTCCTTCAGCTTAAGCATGTTGCTAAACAAGCAACTGCATGAAGCTAGAAACACTGAGTTCTGGTTTCCAGGAGCAAATTTTCCAGAGTGGGTTGATCTCCAGAGCAGTGGACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCCCGCCAAAGTTCTTTCTCTTCTTATTGCACCTGTGGGTGATAAACATCAGTTGGATTTCATTATACCTATGGTGTTCATTGATGGCAAAGTTCAAGAATCAGAAGACTTTTATTTCAAGGAGATAGAGATAGAGAGGATGTTAGAATTCGATCAAACATACATCTTTGATCTACAAAACCTACCTATCTATAGTAAGTTGTTTGAATTACCTATAGAAAAGGAATGGAAGCATGTGAAGGTTACATATGAAGGTGTGATAGAGACCTCAATTGTTAAAGCAACAGGAATCCATGTATTCAAAGACGAAAACAGCATCATGGAAGACATTCGGTTTGATGATCCTTATACCAACAACAAATTAGACAAAGATCTCAACACTTCTCAATCACAAAACCACTTGTTAAGAACCATAGGTTTCTTCATGTGCAAATTTTTCATAGGCCTTTTTCTTTTCCTTTTTAGTGCTTTTATATTTTACTTTATTTACCGGCCTCAGCACCAACCTAAGTAG	3300	0.3848	MATPSFPRFTYDVFLSFRGEDTRYGFTGNLYKALCDRGVHTFIDDDKLQSGDEITPALLKAIEESRIAIVLLSHNYASSSFCLDELATIFHCKKSKGLLVIPVFYKVDPSYVRHQKGTYEEALVKHQKKFKAQKDKLQKWKMALRQVADFSGYHFKDGHEYQYEFIGKIVERVSREINRAPLHVADYPVGLLTQVLHVKKLLDVGSDDVVHMIGIHGMGGLGKTTLSLAVYNLIADDFDSSCFLQNVREESNKHGLKHLQTLLLXEILGEKDIDLTSVQRGISVIQQRLRRKKVLLILDDVDXRKQLQAFAGRSDWFGPGSRVIVTTRDEQVLKCHDIERTYEVKELNKNDSLQLLMWNAFKREKVDPSYEXVLKRAVTYASGLPLALEVIGSNLVGKSVQEWESAIQHYKRIPNSEIVEILKVSFDALGDEEKNIFLDMACCLKGSSLKEVEQILGVLYDNNMKHHIGVLVKKSLIKVGRGRFNAIEMHDLIEDMGRQIDLQSSPKEVGKRRRLWLGKDIIHVLKDNKGTSETEIICLDLSISEKEETIEWNANAFRRMKNLKILIIRNGKFSKGPNYFPESLRVLEWHGYPSNCLPSNFDPNKLVTCKLPXSHFTSFGFLGSSKKFENLTVLNFDKCKFLTQTPDMSDLGNLEEVSFKGCESLVEVHHSIGFMSKLKILNAGGCRKLMSFPPLNLPTLERLELSFCPNLEKFPEILGKMGNIKLLQLNGLPIKEFPLSFENLIGLEELSLSCEVVHLPSSITTMPKLFNFRATNCKGWQWVKAEDGEDNVGSMVPSKVDWFSALSCNLDDDFFSAGFMRLAQVCVLFLRDNNFTHLPECIKEFHNLFFLDVSHCEHLQEIRGFPPKLEYFKAINCISLTSFSLSMLLNKQLHEARNTEFWFPGANFPEWVDLQSSGPSCSFWFRNKFPAKVLSLLIAPVGDKHQLDFIIPMVFIDGKVQESEDFYFKEIEIERMLEFDQTYIFDLQNLPIYSKLFELPIEKEWKHVKVTYEGVIETSIVKATGIHVFKDENSIMEDIRFDDPYTNNKLDKDLNTSQSQNHLLRTIGFFMCKFFIGLFLFLFSAFIFYFIYRPQHQPK*	1100

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra1g1048	1099	SMART	till_3	10	150	IPR000157	GO:0007165
	Vra1g1048	1099	Gene3D	-	7	181	IPR035897	-
	Vra1g1048	1099	Gene3D	Ribonuclease Inhibitor	508	787	IPR032675	-
	Vra1g1048	1099	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	14	913	-	-
	Vra1g1048	1099	Gene3D	-	346	430	IPR042197	-
	Vra1g1048	1099	Gene3D	Ribonuclease Inhibitor	797	902	IPR032675	-
	Vra1g1048	1099	Pfam	NB-ARC domain	198	412	IPR002182	GO:0043531
	Vra1g1048	1099	Pfam	TIR domain	11	178	IPR000157	GO:0007165
	Vra1g1048	1099	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	439	IPR027417	-
	Vra1g1048	1099	ProSiteProfiles	TIR domain profile.	9	177	IPR000157	GO:0007165
	Vra1g1048	1099	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	153	IPR035897	-
	Vra1g1048	1099	PRINTS	Disease resistance protein signature	212	227	-	-
	Vra1g1048	1099	PRINTS	Disease resistance protein signature	288	302	-	-
	Vra1g1048	1099	PRINTS	Disease resistance protein signature	381	395	-	-
	Vra1g1048	1099	PRINTS	Disease resistance protein signature	695	711	-	-
	Vra1g1048	1099	Gene3D	-	182	340	IPR027417	-
	Vra1g1048	1099	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	913	IPR044974	GO:0006952
	Vra1g1048	1099	SUPERFAMILY	"Winged helix" DNA-binding domain	416	526	IPR036390	-
	Vra1g1048	1099	SUPERFAMILY	L domain-like	551	892	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra1g1048	Vra-Chr1	12619736	12633028	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra1g1048	6	777	WRKY Transcription Factor Family	AT4G12020	30.528	7.75e-79	282

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra1g1048	-		-	var:108344036	1828.53