Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1044 ATGGGAAAGCCAAGAGGAGGAGAAGCTGCTCTTTGTTTTCTGGTTTTCTTCTGGTTTTGGAGCTCTTCCAATGCTTTGCTCTCTCCAAAGGGAGTAAACTTTGAAGTGCAAGCTTTAATGGGGATAAAAGCTTTTCTTGTGGATCCCCATGGTATTCTAGATAATTGGGATGCGGATGCAGTTGATCCATGCAGCTGGAATATGGTCACATGTTCCCCAGAGAATCTTGTCGTTAGCCTGGGCATTCCCAGCCAAAATTTATCTGGTATTCTATCTCCAAGCATAGGAAACCTGACATATCTTCAGACTGTGGTGCTACAAAATAACAACTTAACTGGTTCAATCCCTTCAGAGATAGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGACAACTTCTTCAATGGGGAGATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTCCAGTACTTGAGGCTCAATAATAACAGTTTTGATGGAGAATGCCCAGTGTCACTAGCTAACATGGCGCAGCTTGCTTTTCTTGACTTGTCCTACAATAATCTGAGTGGCCCTATACCTAGAATTATGGCCAAATCCTTCAGTATTGTAGGAAACCCCTTAGTCTGCACCACAGGAAAAGAAAAAAATTGCCATGGGATGACACTTATGCCCATGTCGATGAACTTGAACAGTTCTGAGAATGCTATACCATCTGGTAGAACAAAGGCTCACAAAATGGCCATTGCCTTTGGTCTGAGTCTTGGATTCCTCTGCTTGGTAGCTTTTGGTCTTGGACTTATTATATTGAGGAGGTACAAGCGTAAACAAAAGTCATTCTTTCATGTTAAAGACCATCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTACGAGAACTCCAGATTGCTACTAACAACTTCAGCAACAAAAACATCCTCGGCAAGGGTGGTTTTGGACATGTCTACAAGGGAATTCTCCCAGATGGCACTCTTGTAGCAGTGAAGAGGCTTAAAGATGGCAGTGCAACTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATAAGCTTGGCAGTGCACCGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTAAGCCAGTGTTGGATTGGGGCACAAGGAAGCAGATTGCCATAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGAGATGTGAAGGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGGGATTTTGGGTTGGCTAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTGAGGGGTACAGTGGGGCATATAGCACCAGAGTATCTTTCCACAGGGCAATCTTCTGAGAAGACCGACGTCTTTGGATTCGGCATTCTGCTTCTTGAGTTAATCACTGGCCAGAGGGCACTGGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATCCATCAAGAGAAGAAGCTTGAGTTGCTTGTGGACAAGGATCTGATGAGCAACTATGACAGGATTGAGCTTGAGGAAATCGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCTGGCCACAGGCCTAGAATGTCAGAAGTTGTACGCATGCTTGAAGGTGATGGTCTTGCAGAGAAATGGGAAGCTTCTCAGAGTGCTGACAACAGCAAATGCAGCAAACCACATGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCTTTGTTGGTCCAAGCAATGGAACTCTCAGGCCCCAGGTGA 1881 0.4434 MGKPRGGEAALCFLVFFWFWSSSNALLSPKGVNFEVQALMGIKAFLVDPHGILDNWDADAVDPCSWNMVTCSPENLVVSLGIPSQNLSGILSPSIGNLTYLQTVVLQNNNLTGSIPSEIGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFDGECPVSLANMAQLAFLDLSYNNLSGPIPRIMAKSFSIVGNPLVCTTGKEKNCHGMTLMPMSMNLNSSENAIPSGRTKAHKMAIAFGLSLGFLCLVAFGLGLIILRRYKRKQKSFFHVKDHHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGHVYKGILPDGTLVAVKRLKDGSATGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLMSNYDRIELEEIVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAEKWEASQSADNSKCSKPHELSSSDRYSDLTDDSSLLVQAMELSGPR* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1044 626 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
Vra1g1044 626 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
Vra1g1044 626 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vra1g1044 626 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Vra1g1044 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vra1g1044 626 MobiDBLite consensus disorder prediction 585 612 - -
Vra1g1044 626 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Vra1g1044 626 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 8 626 - -
Vra1g1044 626 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Vra1g1044 626 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1044 626 SUPERFAMILY L domain-like 35 197 - -
Vra1g1044 626 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Vra1g1044 626 SMART serkin_6 305 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1044 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 626 - -
Vra1g1044 626 Pfam Protein kinase domain 306 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1044 Vra-Chr1 12534411 12538987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1044 11 626 Receptor kinase-like Gene Family AT5G16000 77.047 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra1g1044 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1044 - - gmx:100806650 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1044 1 12534411 12538987 Vra4g1184 4 18837902 18841666 PCT