Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1042 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTCTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGAAGCCAACCGTGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCTGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTACTTCGTGTGATGCTGACATTCACTCAGCAAACCCTCTTGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTTGGGTCCCCTCTTGGTGGAACCAGATCACGAACCGGAACACGGTTTCGTGAACGAGGTGGAAGAGGAAGAGGGAGAAGTTTTCGATGAGTACGATGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGGGTAACCAAGAGCAGGAGAATGGCCTTTTGTACGGTGATGAGTATTTGGACAACCTTGTGGATTGTAACTCGTGTGGTCACCATAACCAGTTTAGCAACGTTTTTCAGCAGCAGCAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTACAGGTGCTGCAACAATCGCAGCACTTTCAACCGGGTTTGGAATTTGACTCATCAAAAGCTGGCTTCAGTTACGATGGTTCTATTAGCCAAAGTGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATATCAGTGTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAGATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACCAGACCACGAATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGATCAAATGCTTTCCACAACACTATTCAATGAAGTTGGAGGAACCATTTTCCCATCTTTCTAG 1071 0.4818 MLKEGTNNVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHEANRVASRHERVWVCEACERAPAAFLCKADAASLCTSCDADIHSANPLASRHHRVPILPILGPLLVEPDHEPEHGFVNEVEEEEGEVFDEYDDEIEAASWLLPHPVKGNQEQENGLLYGDEYLDNLVDCNSCGHHNQFSNVFQQQQNYNTVPQNYAVVPVQVLQQSQHFQPGLEFDSSKAGFSYDGSISQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTTLFNEVGGTIFPSF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1042 356 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vra1g1042 356 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 15 356 - -
Vra1g1042 356 SMART bboxneu5 63 105 IPR000315 GO:0008270
Vra1g1042 356 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vra1g1042 356 ProSiteProfiles CCT domain profile. 287 329 IPR010402 GO:0005515
Vra1g1042 356 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Vra1g1042 356 CDD Bbox1_BBX-like 19 62 - -
Vra1g1042 356 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Vra1g1042 356 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 356 IPR045281 GO:0009909
Vra1g1042 356 Pfam CCT motif 287 329 IPR010402 GO:0005515
Vra1g1042 356 CDD Bbox1_BBX-like 62 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1042 Vra-Chr1 12516531 12518725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1042 1 356 C2C2-CO-like Transcription Factor Family AT3G02380 54.400 1.81e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra1g1042 zf-B_box 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1042 - - gmx:100782635 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1042 1 12516531 12518725 Vra4g1183 4 18814275 18816755 PCT