Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1040 ATGACAATGCCCTTTCTTACGAAGTTTAACAGTATAGAGATGCTTCTCAATGCATCGAACTCTGTTAGTGCATCCAATAAAAGATGGCACTCTGCATTCATGGCCATCTACTGCTCCCGAGCTATCATGTCACTCTCTGCTCGAAACAAAACATACAAAATCAAAGAAAAAGTCTCACCTACACCAACACCACCGCCATATTTCGTCATGGTTGATTTGAGCCCTCACCGTTCCTTTGGTATTGACCAAACAGTCCTCACGGATATTGTCAAAGAAAAAGACCTTCAGAGCCTTGATACATTTGGTGGAGTTGAAGGGGTGGCGACAGCCCTTGAAACCCATCTCGAGTATGGTATCAAAGGTGGTAGTGGTGGTGATGATGAAGAAGACATCACACGTAGAACACACGTGTTTGGTTCCAACACTTACCACAAACCACCTTCCAAAGGGTTCTTCCACTTTGTGGTGGAAGCCTTTAAGGATGTCACCATTCTCATCCTTTTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAACATGGAATCAAAGAAGGTTGGTACGATGGTGGAAGCATCTTCGTTGCAGTGTTCATTGTGGTTTCCTTGTCAGCAGTGAGCAACTTCAGACAGAACAGACAGTTTGACAAGCTGTCCCAGGTGAGCAATGACATACAAATTGATGTGGTGAGAAGTGGGAGGCGTCAGCATTTGTCAATCTTTGAAATAGTTGTCGGTGATGTCATTTGCTTGAAGATTGGGGATCAAGTGCCAGCAGATGGGTTGTTCATTGAAGGGCATTCACTTAGAGTGGATGAATCAAGCATGACAGGAGAGAGTGATCATGTTGAGATTAGTAGACAGCACCCTTTTTTGTTCTCAGGCACCAAGGTGGCTGATGGGTATGCGAAGATGCTCGTTACCTCAGTTGGTATGAACACAACATGGGGCCAAATGATGAGTTCGATAAGCCGGGATAATGATGAGCAAACTCCTTTGCAAGAGAGGCTAAACAAGCTAACATCGTCCATTGGAAAGGTTGGCTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGTTGGTTAGGTACTTCACAGGGAACACGAAGGATGACAAGGGGGTCAGAGAGTACAATGGAAGCAAGACCAAGTTTGATGATATAATGAATGCTGTTGTGGGAATTGTTGCTGATGCAGTGACCATTGTTGTTGTTGCAATCCCCGAGGGTCTTCCATTGGCTGTGACGCTCACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCAGCATGTGAGACAATGGGTTCTGCCACCACAATTTGCACTGATAAGACTGGGACTCTCACACTCAATGAGATGAAAGTAACCAAGTTCTGGATTGGCCAAGAACCCGTGGCAGAAACTGAGAATGCCAACTCAAAGGTTGCTCCAATTGTTCTTCAACTTATCCAAGAAGGGGTGGCTCTAAACACAACTGGTAGTGTGCAAAAGTCCAACAAATCAGGTTCTGAATTTGAGTTTTCAGGCAGTCCCACAGAAAAGGCCATCCTATCTTGGGCAGTTTTGGAATTGAACATGGAGATGGAGCACTTGACAAAAAGCTGTTCCATCATTCAGGTTGAGACCTTCAACTCAAAGAAGAAGAAAAGCGGAGTTTTGTTGAGAAGGAAGGCAGACAACACAGTTAATGCTCACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGCTCAAGATACTATGATGCTTCTGGTACTGTGAAAGATCTTGACATTGATACAATGTTGAAGTTTGAGCACATCATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTACCTGAGGAAGAGCTTGGAGATGAAAACACAACGGGGAAAGTGAAAGACAGTGGTTTAACATTGTTAGGGGTGGTTGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAAGGCTGTGGAAGCTTGCCAAAAGGCTGGTGTGAACGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAGGGCTATAGCAAGCGAATGTGGGATACTCCAGCCAAATCAGGACACAGCTGGAGCAGTGATTGAAGGAGAGGAATTTCGCAACTACACACATGAAGAGAGGCTGGAGAAGGTGGAAAAAATCTGTGTGATGGCCAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGTCTGAAGCAGAAAGGCCATGTAGTTGCTGTTACCGGGGATGGCACAAATGACGCACCAGCACTCAAAGAAGCTGACATTGGACTATCTATGGGAATTCAAGGTACTGAAGTGGCCAAAGAGAGCTCAGACATTGTTATTTTGGATGACAATTTTGCATCTGTGGTGACTGTCTTAAGGTGGGGAAGGTGTGTTTACAACAACATACAGAAGTTCATTCAGTTTCAGTTGACAGTGAATGTTGCAGCACTTGCTATCAACTTTGTGGCAGCAGTATCAGCAGGGGAAGTGCCACTCACAGCAGTACAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCACTTGCAACAGAAAAGCCCACCAATGAATTGATGGACAAACCACCAGTTGGTAGAACAAAACCTCTAATCACCAATGTCATGTGGAGGAATCTATTGGCTCAAGCTTTGTACCAGATAGCAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTAAATGACACATTGATTTTCAACACATTTGTTCTCTGTCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTATTCAAAGGCATACACAGGAGCAAGTTGTTTTTAGGAATCATTGCCATAACAATAATCCTTCAGGTTGTTATGGTTGAGTTTCTAAAGAAATTTGCTGACACAGAGAGGCTAAATTGGGGGCAATGGGCTATCTGCATTGCTCTAGCTGCAGTTTCCTGGCCAATAGGTTGGCTTGTGAAGTTGATACCTGTCCCAGAGAAACCATTTCTCAATTTTTTGAGAATCAAGAAATGA 3084 0.4397 MTMPFLTKFNSIEMLLNASNSVSASNKRWHSAFMAIYCSRAIMSLSARNKTYKIKEKVSPTPTPPPYFVMVDLSPHRSFGIDQTVLTDIVKEKDLQSLDTFGGVEGVATALETHLEYGIKGGSGGDDEEDITRRTHVFGSNTYHKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVVSLSAVSNFRQNRQFDKLSQVSNDIQIDVVRSGRRQHLSIFEIVVGDVICLKIGDQVPADGLFIEGHSLRVDESSMTGESDHVEISRQHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISRDNDEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDDKGVREYNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWIGQEPVAETENANSKVAPIVLQLIQEGVALNTTGSVQKSNKSGSEFEFSGSPTEKAILSWAVLELNMEMEHLTKSCSIIQVETFNSKKKKSGVLLRRKADNTVNAHWKGAAEMVLKMCSRYYDASGTVKDLDIDTMLKFEHIIQGMAASSLRCIAFAHVEVPEEELGDENTTGKVKDSGLTLLGVVGIKDPCRPGVKKAVEACQKAGVNVKMITGDNVFTARAIASECGILQPNQDTAGAVIEGEEFRNYTHEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTNELMDKPPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIAITIILQVVMVEFLKKFADTERLNWGQWAICIALAAVSWPIGWLVKLIPVPEKPFLNFLRIKK* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1040 1027 SUPERFAMILY Calcium ATPase, transduction domain A 227 323 IPR008250 -
Vra1g1040 1027 SFLD C1.7: P-type atpase like 431 810 - -
Vra1g1040 1027 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 729 838 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g1040 1027 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 392 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g1040 1027 Gene3D - 127 325 - -
Vra1g1040 1027 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 92 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vra1g1040 1027 PANTHER CALCIUM-TRANSPORTING ATPASE 15 1001 - -
Vra1g1040 1027 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 663 IPR023299 GO:0000166
Vra1g1040 1027 SMART Cation_ATPase_N_a_2 94 179 IPR004014 -
Vra1g1040 1027 SUPERFAMILY HAD-like 447 862 IPR036412 -
Vra1g1040 1027 Gene3D - 459 658 IPR023299 GO:0000166
Vra1g1040 1027 PANTHER CATION TRANSPORTING ATPASE 15 1001 - -
Vra1g1040 1027 PRINTS H+-transporting ATPase (proton pump) signature 606 624 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g1040 1027 PRINTS H+-transporting ATPase (proton pump) signature 757 773 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g1040 1027 PRINTS H+-transporting ATPase (proton pump) signature 789 814 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g1040 1027 SUPERFAMILY Calcium ATPase, transmembrane domain M 102 1014 IPR023298 -
Vra1g1040 1027 Gene3D - 157 1011 - -
Vra1g1040 1027 Pfam haloacid dehalogenase-like hydrolase 446 771 - -
Vra1g1040 1027 Pfam Cation transporting ATPase, C-terminus 842 1012 IPR006068 -
Vra1g1040 1027 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Vra1g1040 1027 SFLD p-type atpase 431 810 IPR044492 -
Vra1g1040 1027 PRINTS P-type cation-transporting ATPase superfamily signature 273 287 - -
Vra1g1040 1027 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Vra1g1040 1027 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Vra1g1040 1027 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Vra1g1040 1027 PRINTS P-type cation-transporting ATPase superfamily signature 757 776 - -
Vra1g1040 1027 PRINTS P-type cation-transporting ATPase superfamily signature 781 793 - -
Vra1g1040 1027 CDD P-type_ATPase_Ca_PMCA-like 131 890 - -
Vra1g1040 1027 Pfam E1-E2 ATPase 227 427 - -
Vra1g1040 1027 Pfam Cation transporter/ATPase, N-terminus 102 174 IPR004014 -
Vra1g1040 1027 Gene3D - 446 802 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1040 Vra-Chr1 12467289 12470867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1040 12 1027 Primary Pumps ATPases AT3G22910 68.922 0.0 1346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1040 K01537 - gmx:100793918 1746.48