Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1038 ATGAGGAAACCTGATATGATGCCAAAAGACAAACTCAACACCACTACCACCACCATTAACACCACCACCAACAACAACAACATTAAGACCAAGCTAAGAAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAACTGATAAGGTACATGATCACTAAGGGACAAGGATGTTGGAGTGACATTGCAAGGAATGCTGGTCTTCAAAGGTGCGGCAAAAGTTGTCGTCTTCGTTGGATCAACTACCTCAGACCTGATCTCAAACGTGGTGCATTCTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCCCTTCTTGGAAACAGATGGTCTCAGATTGCTGCACGTCTTCCTGGTCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACACTGAAGAAAAGGTTGAAAGTGATCAGCAGCAGCAACATCAACAACACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGGATAGTGCCAATGAATGATCAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCAATCCATGCAAGCCAACATGGCACTAACTGACCAATTTGACCCCTTTCCTTTGTTGTCCAACCGCTATGACATGACCACCGGTGCAGCCGGTTTCCTTGACAACATGGCTGCATGCTTAACACAAGTTGGTATGGCAGATCATGATGATGGGGTTGTTCATGGAGGTTATGGGGCATTGGAACCTAATAAAATGGGGATAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGACAATTCTAGTAACCCAATTGATGTGAAAAGCCATAACAACAACCACTTGAAGAACAGTTGCTTCAGTAACACTGATCATCACCATCACCATCATCATCATCATAATTTTCAAACCTCCAACAACGTAGTTGTAGAGGATTTGTTTGGTTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTCCCTTCCCTTGATTTCCAAGTTTAA 1071 0.4398 MRKPDMMPKDKLNTTTTTINTTTNNNNIKTKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKVISSSNINNTSSPNNSDSSDPRDVMGGIVPMNDQHDLMTMCMDSSSSTSSSSMQSMQANMALTDQFDPFPLLSNRYDMTTGAAGFLDNMAACLTQVGMADHDDGVVHGGYGALEPNKMGIESDFSLPPLESRSIEDNSSNPIDVKSHNNNHLKNSCFSNTDHHHHHHHHHNFQTSNNVVVEDLFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1038 356 CDD SANT 89 132 IPR001005 -
Vra1g1038 356 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Vra1g1038 356 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Vra1g1038 356 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Vra1g1038 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Vra1g1038 356 PANTHER TRANSCRIPTION FACTOR MYB83 22 356 - -
Vra1g1038 356 CDD SANT 37 81 IPR001005 -
Vra1g1038 356 MobiDBLite consensus disorder prediction 258 284 - -
Vra1g1038 356 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Vra1g1038 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Vra1g1038 356 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Vra1g1038 356 Gene3D - 88 161 - -
Vra1g1038 356 MobiDBLite consensus disorder prediction 142 158 - -
Vra1g1038 356 MobiDBLite consensus disorder prediction 268 284 - -
Vra1g1038 356 Gene3D - 31 87 - -
Vra1g1038 356 MobiDBLite consensus disorder prediction 142 161 - -
Vra1g1038 356 PANTHER MYB DOMAIN PROTEIN 55 22 356 - -
Vra1g1038 356 SMART sant 86 134 IPR001005 -
Vra1g1038 356 SMART sant 33 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1038 Vra-Chr1 12443161 12445807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1038 1 356 MYB Transcription Factor Family AT3G08500 47.090 8.86e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g1038 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1038 K09422 - gmx:100813660 521.931