Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1030 ATGAAGAAAATACTTTTAGTCTTGGTCACCTTGTTATTTATTGTCAACGCTAGTATTCGTCCAAAGTGGGACCAGGGACTGTTAGAGGATGAAAAAGACTTAGAAGTCTTGAAGTATAATATGGTGGTAGCTTTAGATGGTAGTGGTAATTTCACTACCATTTCTAAAGCTATAGAAGCTGCTCCTGTGTTGAGTTCTAAGAGAATTGTTATAAAAATAAAAGGGGGCATATATCGAGAAAATTTGAAATTTCCATCTAATAAGACTAACCTCTTTTTGGTTGGGGATGGAAGAGGTATCACTGTCGTTACCGGAACCAAAAACGGGCGAGCTGGTCTCAGTACCTTGGAAACTGCAACTGTAGTTGTTGAAAGTGTACATTTTCTAGCGAGTAACATTACTTTCCAGAATACAGCAGGACCTTCAAACCATCAAGCTGTTGCCCTAGCGCTAGCAGGGACTTTCACTGCATTTTACAACTGTGAGGTGTTGGGATATCAAGACACTCTTTATGTTATGCAGGGTAAACATTTTTTTGTGAAGTGTCTTATTGAAGGCACGGTAGATTTTATTTTTGGTGACACAGCACAAGTGGTATTACAGAACTGTGATATTCAAGTGAGAATTCCTCTCCCAGGCCAGCCGAACGTCATAACTGCTCAAGGAAGAAGTAAAAATAACAAAAAGGGTGGAATTGTAATCCAAAACTGTAGGATTGGTGCAACTCACGACTTTGAAGGCGTAAAAAAGAGATTCAAAACATATTTAGGAAGGCCATGGAAGAATTATTCAAGAACTATTATCATGGAAAGTAATATGAGTGATATAATTGACCCAGCTGGCTGGACAGAATGGGAGGGTACTACTCGTGGTCTTAACACTCTATTTTATAGAGAGTATAATAACTTTGGACCTGGTGCTCAAACCTCTAAAAGGGTCACATGGAAAGGATTCAAAGTGGTCACTCATGCTGTTGAGGTCGAACCTTTTACTGTGAGAAACTTCATTGATGGCTCTCAATGGTTGAATTCTACTGGGTTTCCTTATAAATTAGACTTATAA 1062 0.3879 MKKILLVLVTLLFIVNASIRPKWDQGLLEDEKDLEVLKYNMVVALDGSGNFTTISKAIEAAPVLSSKRIVIKIKGGIYRENLKFPSNKTNLFLVGDGRGITVVTGTKNGRAGLSTLETATVVVESVHFLASNITFQNTAGPSNHQAVALALAGTFTAFYNCEVLGYQDTLYVMQGKHFFVKCLIEGTVDFIFGDTAQVVLQNCDIQVRIPLPGQPNVITAQGRSKNNKKGGIVIQNCRIGATHDFEGVKKRFKTYLGRPWKNYSRTIIMESNMSDIIDPAGWTEWEGTTRGLNTLFYREYNNFGPGAQTSKRVTWKGFKVVTHAVEVEPFTVRNFIDGSQWLNSTGFPYKLDL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1030 353 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Vra1g1030 353 Gene3D - 35 353 IPR012334 -
Vra1g1030 353 PANTHER PECTINESTERASE 38 352 - -
Vra1g1030 353 PANTHER PECTINESTERASE 38 352 - -
Vra1g1030 353 SUPERFAMILY Pectin lyase-like 37 351 IPR011050 -
Vra1g1030 353 Pfam Pectinesterase 40 338 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1030 Vra-Chr1 12238396 12239573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1030 21 353 Carbohydrate Esterase AT1G53830 55.786 8.21e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1030 K01051 - gmx:100777646 395.586