Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1024 ATGGACAGGTCAACTGGCCGCAGTGGTGGTGGAAGTGTGGACACGTTTCTACCAAATTATAAGTTGGGGAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCCGAACACGTACTGACTGGTCATAAAGTTGCTATAAAGATCCTTAACCGCCAGAAGATAAGAAACATGGAAATGGAAGAAAAAGTTAGAAGGGAAATCAAAATTTTAAGATTGTTTATGCATCATCACATTATACGACTTTACGAGGTCATAGAAACCCCATCAGACATATTTGTTGTTATGGAGTACGTGAAATCTGGAGAGCTCTTTGATTACATAGTGGAGAAGGGTAGGTTGCAAGAGGACGAAGCCCGCCATTTTTTTCAGCAGATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATTTAATATCAAGATTGCTGATTTTGGCTTGAGCAATATCATGCGTGATGGTCACTTCCTTAAGACAAGTTGTGGAAGCCCTAACTATGCGGCTCCAGAGGTTATCTCGGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTTTTCAAAAAGATAAAGGGTGGGATATACACTCTTCCTAGTCATCTGTCACCTGGTGCTAGAGATTTGATTCCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACAATACCTGAGATACGTCATCACCCATGGTTCCAAGTTCGTCTGCCACGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGATTGACGAGGAGATTCTTCAAGAAGTGGTTAAGATGGGATTTGAAAGGAATCAATTGATTGAATCTCTTGCAAACAGAATACAAAATAAGGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTCCGTGTATCCAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGGATTCTGGTTTCAATCGGATCCATTCCAGTGAAGTTCCTTCTCCAGTTGTTGGACACCACAGCACAGGATATATGGATTACCAGGGAGTAGGAATGCGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCACAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGTAGATGGGTTGCTAGCATTCCCAGTCATCATGAAGGAATGATTAACAATTCTGTGCATAGTAATCATTACTTTGGAAATGATTCCAGCATTATTGAAGATGAGGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAGCTCGTGAGGAGAAGTATCTACTTGATCTTCAGAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTCTGTGCTGCTTTCCTTTCACAGCTTCGTGTTCTCTAG 1548 0.4186 MDRSTGRSGGGSVDTFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRQKIRNMEMEEKVRREIKILRLFMHHHIIRLYEVIETPSDIFVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRHHPWFQVRLPRYLAVPPPDTLQQAKKIDEEILQEVVKMGFERNQLIESLANRIQNKGTVTYYLLLDNRFRVSSGYLGAEFQETMDSGFNRIHSSEVPSPVVGHHSTGYMDYQGVGMRQQFPAERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCRWVASIPSHHEGMINNSVHSNHYFGNDSSIIEDEAVSKSNVVKFEVQLYKAREEKYLLDLQRVQGPQFLFLDLCAAFLSQLRVL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1024 515 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1024 515 CDD STKc_AMPK_alpha 17 272 - -
Vra1g1024 515 CDD UBA_SnRK1_plant 294 334 - -
Vra1g1024 515 SUPERFAMILY KA1-like 329 514 IPR028375 -
Vra1g1024 515 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1024 515 Gene3D Kinase associated domain 1, KA1 396 513 - -
Vra1g1024 515 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 514 - -
Vra1g1024 515 SUPERFAMILY Protein kinase-like (PK-like) 17 273 IPR011009 -
Vra1g1024 515 SMART uba_6 295 332 IPR015940 -
Vra1g1024 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Vra1g1024 515 Pfam UBA/TS-N domain 294 330 IPR015940 -
Vra1g1024 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 333 IPR015940 -
Vra1g1024 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vra1g1024 515 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1024 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Vra1g1024 515 PANTHER SERINE/THREONINE KINASE 9 514 - -
Vra1g1024 515 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vra1g1024 515 CDD AMPKA_C 390 512 - -
Vra1g1024 515 Gene3D Transferase(Phosphotransferase) domain 1 11 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1024 Vra-Chr1 12185298 12198200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1024 20 273 CBL-interacting serine-threonine protein kinases AT2G26980 52.140 6.15e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vra1g1024 Pkinase 4e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1024 K07198 - gmx:547544 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1024 1 12185298 12198200 Vra1g1024 1 12185298 12198200 ECH