Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1023 ATGGGTTGCATTAGCTCCAAAAATGTGGTTGCCAGAGCGTATTCTCCATCCCCAACAATGGTGGAAATTTCAGAGTCGATTCGCGCTTCCAGCAGGGGCCATTCTGGATTGACGATTTTGGATTCTAAAGGAAATGTAGACAATGAGAGAAACAACAACAGCAACATCAAGATTAAGAAAAATAGTTCAAAGAAGAGTAATGGATCTTTTAGCTTACGGCATGGGTTGGTTCACAGAAACGTTGAGGCTGAACAAAATGCTGTTGGTTGGCCGCCATGGCTCACTGCTGTTGCAGCAGAAGCCATTCAAGGATGGATCCCTCTCAAAGCAGATTCTTTTCAAAAGTTAGAAAAGATTGGACAAGGTACATATAGCAGTGTGTTTCGAGCTCGTGAAGTTGAAACTGGGAAGCTATTTGCTTTGAAAAAGGTGCGGTTTGACAATTTTCAACCTGAGAGTATTAGGTTTATGGCAAGAGAAATAACAATCCTTCGAAGGCTTGATCACCCAAACATCATGAAATTGGAAGGCATAATCACTTCTCGCCTATCAAATAGCATATACCTTGTATTTGAATACATGGAACATGATCTTGCTGGTCTAGTGTCACGTCCTGAGATAGTATTCACTGAATCACAGATAAAATGTTACATGAGGCAACTTTTAAGTGGACTCGAGCATTGTCATATGCGTGGTATTATGCACAGAGACATCAAAGTATCAAATATCTTATTAAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGTACAAGTAACAAAAATCCTTTGACAAGTCGTGTTGTGACTTTGTGGTATCGTCCTCCTGAGCTATTGATGGGATCAACTAGCTATGGAGTGTCAGTAGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGAAGAACCGAGGTTGAACAATTGCACAAAATTTTTAAGTTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACCAAACTTCCTCATGCAACCATGTTTAAGCCTCAAACAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGATTTTCCTGAAACTGCTATAGACCTACTTGAGACTTTATTATCCATTGATTCAAGCAACCGAGGAACTTCCTCATCTGCCTTAATGTCTGAGTATTTTAACACTAAGCCATACGCTTGTAACCCATCAAATCTCCCAAGATACCCACCAAGCAAAGAAATGGATGTAAAAGTTCAAGAAGATTCATCCAGGAAAAAGATTGAAGGTAAAGTGAGAGAGGTTGCAACATCAAGAAGACAACCAAGACGAGTCAATAAACTTTTGAATGATCAAAACAATTTTGGTAAATCAAGCTCAAAAGAGAACATGCAAAACAGTTCTCAAAATGGCCATAAAGATGATGGTAAAACACATCTTACAAAAGGAAGAGGAGGAAACATGTACAAAGATCATGCAAAGCCTGCAATGGATACCATGTCTGAGACCTCCCAAATGATGAATGTTGTTAATGGTAATGGATACAGTGTGCCAATACAAGTTTCAGGATCTACTAATGATTATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACAGTATCAGATGGATCAAAAAGCAAAATCAGTGCACTAGATACCAACTTTGCCAAAGGAACATATGATTTATCTAACCAAAGAGTTTCAATGGATTTTGATCCTGCTGAATTGGTGAATGCTCAGGGTCGTAGAGAAAATGATGCACAACGTGCAATTCGTAAATCGAGGTTTGGAAGAGATAAATGA 1818 0.3878 MGCISSKNVVARAYSPSPTMVEISESIRASSRGHSGLTILDSKGNVDNERNNNSNIKIKKNSSKKSNGSFSLRHGLVHRNVEAEQNAVGWPPWLTAVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKLFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPEIVFTESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTSNKNPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPETAIDLLETLLSIDSSNRGTSSSALMSEYFNTKPYACNPSNLPRYPPSKEMDVKVQEDSSRKKIEGKVREVATSRRQPRRVNKLLNDQNNFGKSSSKENMQNSSQNGHKDDGKTHLTKGRGGNMYKDHAKPAMDTMSETSQMMNVVNGNGYSVPIQVSGSTNDYTWVKRRKQDASSTVSDGSKSKISALDTNFAKGTYDLSNQRVSMDFDPAELVNAQGRRENDAQRAIRKSRFGRDK* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1023 605 Gene3D Transferase(Phosphotransferase) domain 1 196 437 - -
Vra1g1023 605 MobiDBLite consensus disorder prediction 34 69 - -
Vra1g1023 605 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Vra1g1023 605 MobiDBLite consensus disorder prediction 583 605 - -
Vra1g1023 605 MobiDBLite consensus disorder prediction 419 492 - -
Vra1g1023 605 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1023 605 MobiDBLite consensus disorder prediction 419 449 - -
Vra1g1023 605 MobiDBLite consensus disorder prediction 450 474 - -
Vra1g1023 605 MobiDBLite consensus disorder prediction 590 605 - -
Vra1g1023 605 MobiDBLite consensus disorder prediction 475 492 - -
Vra1g1023 605 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Vra1g1023 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Vra1g1023 605 PANTHER CELL DIVISION PROTEIN KINASE 3 599 - -
Vra1g1023 605 PANTHER CYCLIN-DEPENDENT KINASE 3 599 - -
Vra1g1023 605 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1023 605 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1023 605 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Vra1g1023 605 CDD STKc_CDK9_like 113 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1023 Vra-Chr1 12170939 12178842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1023 105 437 Core Cell Cycle Gene Families AT5G10270 47.278 2.11e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra1g1023 Pkinase 8.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1023 - - gmx:100790917 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1023 1 12170939 12178842 Vra1g1023 1 12170939 12178842 ECH
Vra4g1053 4 17727144 17734125 Vra1g1023 1 12170939 12178842 ECH