Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1020 ATGCTCTGCCCAAGAACATGTCTATGTTGGAGATTGGCTTTATACTTCAATGTTCTGGAGGTGAACAAGACAAACTACGAGAATTGCATAGACAGAGACTTCATAAGAAACGTGACAAGAGGTGGTCGTGATGTGGTGCAGATGACAGAGGCAAAGACCTATTACTACCTCTCAGGTGGAGGCTACTGTTTCCATGGCATGAAAGTTGCTGTGCATGTTCAACAACATCCTGCAATGGCACCAGCTCCATCCATGCCTGTCTCTGCTTCTCCTTTGCCCTCTCTCTCGTCTTCCTGCATTTCGATCATTCTCGTTAATGTCCTTTATTATGTCAACTTCCTTTTCATCGATGGTTCGTGTCTGCTGAGCTTTTCTTAG 378 0.4497 MLCPRTCLCWRLALYFNVLEVNKTNYENCIDRDFIRNVTRGGRDVVQMTEAKTYYYLSGGGYCFHGMKVAVHVQQHPAMAPAPSMPVSASPLPSLSSSCISIILVNVLYYVNFLFIDGSCLLSFS* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1020 125 Pfam Plastocyanin-like domain 17 67 IPR003245 GO:0009055
Vra1g1020 125 ProSiteProfiles Phytocyanin domain profile. 1 75 IPR003245 GO:0009055
Vra1g1020 125 PANTHER BLUE COPPER PROTEIN 15 107 IPR039391 GO:0009055
Vra1g1020 125 PANTHER EARLY NODULIN-LIKE PROTEIN 20 15 107 - -
Vra1g1020 125 SUPERFAMILY Cupredoxins 16 73 IPR008972 -
Vra1g1020 125 Gene3D - 10 74 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1020 Vra-Chr1 12146417 12149232 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1020 17 108 Phytocyanin Superfamily AT2G27035 42.553 6.57e-23 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1020 - - vra:106757590 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1020 1 12146417 12149232 Vra1g1020 1 12146417 12149232 ECH