Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1009 ATGGCAGAACCATCCACCGTCGCCGCCGCCGCCGCCGCCACCACCGCGGCGGACCCTCCTCCGCCTGTTACCAAAAGATGGGCTGACGAAGCGGACGAAGAAACCGAAGCCTCCGCCACCGCCACCGCCACTGAAGCCGCTTCCGTCAACCTCGATTCATTAAAAATCGAAGACAACGATGAGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATACAAAAGGTTACCTCTGGAGAAACGCCGTACACGTCTGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTAGAGATGAAGTTCCAGAAACCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCAACCCGCCGCACCGCGACCTCATCGCGCAGGCGCACAACGGGTCTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTCTGCCCCACTCGGGAGTTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGGAAGTACACCGGGATTGCGTCGGAGTGCGCTGTGCCGACGGATAGCAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCGCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTCTTCTTTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAATGAAACACACTGCCAGCTATACCCGTGAACCTGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAAGGGGCTGTATTTAACCTGATATGTGATCAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAGCTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAAGGTGCTCTCAAGGAAGCCGGTTTACTGCAATGA 1494 0.4866 MAEPSTVAAAAAATTAADPPPPVTKRWADEADEETEASATATATEAASVNLDSLKIEDNDENPPKLLDDPDDSSIQKVTSGETPYTSAAKFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPTDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDQKDERLMSKIENHFGTRVAEVRAQSVEDYKGALKEAGLLQ* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1009 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 487 IPR001650 -
Vra1g1009 497 MobiDBLite consensus disorder prediction 1 79 - -
Vra1g1009 497 Pfam DEAD/DEAH box helicase 115 286 IPR011545 GO:0003676|GO:0005524
Vra1g1009 497 Pfam Helicase conserved C-terminal domain 324 446 IPR001650 -
Vra1g1009 497 Gene3D - 308 490 IPR027417 -
Vra1g1009 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 464 IPR027417 -
Vra1g1009 497 Gene3D - 67 305 IPR027417 -
Vra1g1009 497 MobiDBLite consensus disorder prediction 54 72 - -
Vra1g1009 497 CDD DEADc_DDX19_DDX25 96 299 - -
Vra1g1009 497 PANTHER DEAD-BOX HELICASE DBP80 68 476 - -
Vra1g1009 497 SMART ultradead3 109 314 IPR014001 -
Vra1g1009 497 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 68 476 - -
Vra1g1009 497 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 118 IPR014014 GO:0003724
Vra1g1009 497 SMART helicmild6 353 446 IPR001650 -
Vra1g1009 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 298 IPR014001 -
Vra1g1009 497 CDD SF2_C_DEAD 311 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1009 Vra-Chr1 12038973 12044716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1009 82 478 Eukaryotic Initiation Factors Gene Family AT1G72730 36.275 2.16e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1009 K18655 - gmx:100784739 761.525