Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1005 ATGGCTGCGACAAAACCCCAACGCACTCCGCAGGAAGTGGAGGACATTATCATCCGCAAAATCTTCCTCGTCTCCATAACAGAAATCGAGAAGACAAGCGCAACGGATTCAAGAATCGTGTATTTGGAGCTAACAGCTGCGGAGATTCTCAGCGAAGGGAAGGAGCTTCGCCTCTCGCGGGATTCAATGGAGAGGGTTTTGATCGACCGTCTCTCCGGAGACTTTTCTTCCACCACCGGTGAAGCCAGTGAGACACCGTTCCAGTACCTCATCGGATGTTACCACCGGGCGCACGAGGAGGGGAAGAAAATTGCGAACATGAAGGACAAGAGCTTGCGCTCGGAGATGGAGGCGGTGGTGAGGCAGGCTAAGAAGCTCTGTGTCAACTACTGCCGGATTCATTTAGCCAATCCCGAGCTCTTTCCGAGCCGGAAATCTGCGGGTACCGACGCCAAATCGCCGTTACTGCCGCTGATTTTTGCGGAGGTAGGCGGCGGAAGCGTGTTCGGGGGAGGCGGTGGCGGGGTCAAGAGTCCGCCGGGGTTTCTGGAGGAGCTTTTCAGGGACCCGGACTTTGACAGCTTGGACCTGATTCTGAAGGGGTTGTATGAGGAGTTGAGAGGGAGCGTTATGAATGTGTCTGCTCTGGGGAATTTTCAGGATTCTCTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCTTCGGTGCCAAGTCGCTTGTGAATCACGAGTGGTGGATTCCCAAAGGGGTTTATGTGAATGGCCGTGCTATTGAAATGACCAGCATTTTGGGTCCCTTCTTCCATATTAGTGCTCTTCCTGATCAGGCGTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCAGCTGATTTGTTATCTTCATTTTCGACTATTAAAACTGTCATGAACAACTTATATGATGGGCTAGCTGAAGTTATGCTCATCCTTCTTAAAAGTACAGATACTCGTGAAAGAGTACTTGAGTATCTTGCGGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCACCTTTGTAAATCTCAGTGCTGTCATGCTTCGTCTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAGATTGATGCAAAATATGTACATTACTCAAATCGCTTGAAGATAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTGCTGAATGGCTTAATAGTAAAAACCCAGCTAAGACTGGGGCAACCAATCAATATAATGATGATCAGAAACGCTTACAACAATCCCAAGAGGCCAGTAGTTCTGGTAGTAATAATGCTGGTGAGCTCTCAAATGAAAATTCTGCACCAGCTGAAAAGACGAAATATTCATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACATTTAGTTCAGGATATATCTAGGTGTGAAGATGCTCTATCCACACTTAAAGCCATGCAGGAGCGGGCACCCACTCCTCAGGCAGAATTGCATATAAATCGACTTGAGAAAGAAATGGAGTTGTATTCGCAGGAAAAATTTTGTTATGAAGCTCAGATTTTGAGGGATAACACACTTATTCAAAATGCACTTTCTTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCTTGGTGGGTGGTTTCAAAATGCCCCTACCACCAACTTGCCCTATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTCTAATATTTGCTTCACGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAATTTATGAATTTTATAATTATGTTCATGGCCAGCCCTGAATTTATTAAAAACCCATACCTGAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATGCCTCGTAGGAGTGGCTCATCTGCAACAGCCACTCTATTTGAAGGTCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTTAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCACAATATTGCGGAACTCCTCGAATACCTGTGGCAAGTCCCTAGTCATCGCAATGCTTGGAGACAGATTGCTAAGGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTGAACTTTCTGATCAATGATAGTATTTATCTTCTGGATGAAAGTTTGAAAAAAATTCTTGAGCTAAAAGAATTCGAGGCTGAGATGTCTAATACGGTTGAGTGGGAGCAACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGAATAGATATGAAGTTGGCAAACGAAGATGTGAGCATGCTTGCATTTACTTCAGAACAGATTACTGCTCCGTTCCTACTTCCTGAGATGGTTGAGAGAGTGGCTAGCATGCTCAATTACTTCCTGCTGCAATTGGTTGGTCCGCAAAGAAAATCACTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTACTAAAACAGATTGTGCACATATATGTTCATTTGGCTAGGGGTGACACGAATTCCATCTTCCCATCTGTCATCTCAAGGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCCGATGTCCTTCACAGAATTGGTGAGGACGGAAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCGGAGGCCATGGATGCTGAAGCTACTCTAGGAGAAATACCGGAGGAATTCCTTGATCCGATTCAATACACTTTGATGAAGGATCCAGTAATTTTGCCTTCTTCAAGGACGACGGTTGATCGTGCTGTGATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCCTTCAACCGTTCTCATCTCACTGTGGATATGTTGATTCCCAATGTTGAGCTAAAAGCAAGAATTGAGGAGTTTGTGAGGTCTCAAGAAATGAAAAAACACGGTGAAGGGCTAAGCCTACAGAGTAACAAGGACACAATTCAGACTACAAATGGGGAAATGTTGATTGATTAG 3129 0.4417 MAATKPQRTPQEVEDIIIRKIFLVSITEIEKTSATDSRIVYLELTAAEILSEGKELRLSRDSMERVLIDRLSGDFSSTTGEASETPFQYLIGCYHRAHEEGKKIANMKDKSLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRKSAGTDAKSPLLPLIFAEVGGGSVFGGGGGGVKSPPGFLEELFRDPDFDSLDLILKGLYEELRGSVMNVSALGNFQDSLRALLYLVRFPFGAKSLVNHEWWIPKGVYVNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVMLILLKSTDTRERVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKISGLTALHASSEEVAEWLNSKNPAKTGATNQYNDDQKRLQQSQEASSSGSNNAGELSNENSAPAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQERAPTPQAELHINRLEKEMELYSQEKFCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLKKILELKEFEAEMSNTVEWEQRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPSVISRDGRSYNDQLFSAAADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPEEFLDPIQYTLMKDPVILPSSRTTVDRAVIQRHLLSDSTDPFNRSHLTVDMLIPNVELKARIEEFVRSQEMKKHGEGLSLQSNKDTIQTTNGEMLID* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1005 1042 SUPERFAMILY RING/U-box 936 1016 - -
Vra1g1005 1042 SMART Ubox_2 947 1010 IPR003613 GO:0004842|GO:0016567
Vra1g1005 1042 MobiDBLite consensus disorder prediction 427 463 - -
Vra1g1005 1042 Pfam Ubiquitin elongating factor core 263 927 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Vra1g1005 1042 ProSiteProfiles U-box domain profile. 943 1017 IPR003613 GO:0004842|GO:0016567
Vra1g1005 1042 Pfam U-box domain 944 1015 IPR003613 GO:0004842|GO:0016567
Vra1g1005 1042 Coils Coil 529 549 - -
Vra1g1005 1042 PANTHER - 1 1019 - -
Vra1g1005 1042 PANTHER UBIQUITINATION FACTOR E4 1 1019 IPR045132 GO:0000151|GO:0030433|GO:0034450
Vra1g1005 1042 CDD RING-Ubox_UBE4A 946 1014 - -
Vra1g1005 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 943 1021 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1005 1 1042 U-box Gene Family AT5G15400 75.309 0.0 1622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1005 K10597 - gmx:100806175 1872.06