Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0974 ATGTTTTCTGCTTCTTCTCTTACTGTCTCTTCTTCTTCTTCTTCTTCGTCTTCTTATTCTTGTTCTGCTTCTCCTTCTTCTTCTTCTCATTGCAGTTCAGTGATCAAAGGCAATTCCCTCATGCAATTTCTCTTAGTTGTCTTAGTGGTCCTTTTCACGTTGCAAAACGGCGCCTTTGCGATCGATTCGGACAAATCCGCGCTCCTCCGTATGAAGGCGTCGTTGTCCGACCCCGCCGGCGTTCTCTCCACGTGGACCACCGCCGACGGTTCTCACTCCGGCCACTGCTACTGGTCTGGCGTCCTCTGTGACGCGAACTCCCGCGTCGTCGCCGTCAACGTCACCGGAAACGGCGCCAGCCGAACCTCGCACCCGTGCTCCGATTCCTCTAAATTCCCCCTCTACGGTTTCGGAATTCGGCGAACATGCAAAGGTAGTAAAGGTTCTCTCTTCGGAAACGTTTCTTCTGTTGGTTTCGATTTCATCAGTGAGCTCACTGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCATGGAAAATCTAGAGGTTCTCGATTTAGAAGGGAACTTGATAAGTGGTTATCTTCCTTTGAGAATTAACGGCTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTATTGGGGAGGTACCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTCTGAATTTGGCTGGCAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAACATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGGGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTGGTGAGTTTGGGAAGCTCAAGAGCCTTGAGTTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGAGGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTTCGCGGTGATGCTGCCGGTGATTTTGGGAAATTAGGTTCAGTGAATGATGAGGTGAATTATTTTNAAGGNTCAATGCCNCTGGAGGTTTTTTCGCTTCCAAACTTGAGGATATTGTGGGCTCCCATGGTGAATCTAGAAGGAAGTTTTCAAGGGAATTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAACTTTTTGAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCAAGAGGCTGCATTTTCTTGATTTAAGTGGAAACAACCTTACCGGGGTGCTTTCTGAAGAACTTCACGTTCCCTGTATGAGTGTTTTTGATGTTAGTGGGAACATGTTGTCTGGCTCAGTTCCTGATTTCTCCAATATCGTTTGTCCCCCTGTTCCTTCTTGGAATGGAAACCTGTTTGAAGATGGGAATGTTTCCTCGCCATATGCCTCGTTTTTTTTGTCAATGGTTCATGAAAGTTCTCTTTTTACATCAATGGGGGGAATTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGTCGCTACCCGTACCTCATGACAGGCTGGGGAAGAAGAATGGTTACACGTTTCTTGTTGGTGGAAATATTCTTACAGGAACATTTCCTACATATTTATTTGAGAAATGTGATACACTAGACGCATTCCTTTTAAATGCCAGTTATAATAATATATCTGGTCATATACCTTTCAATATCAGTCGAATGTGCAGATCATTGAAATATTTGGACGTGTCTGGAAACCAACTTGCGGGACCTATTCCTGTTGATTTAGGGAATGTTGTATCCCTTGTATCGCTAAACCTCAGTAGGAATCAATTACAAGGTCAAATTCCCTCCAGCCTTGGCCAGATGAAGAATCTGAAGTTTCTCTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTTGACCTCTCTTCAAACTCTCTTACTGGTGAAATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCATATTCCTGATGGTTTGGCACATGTTCCTTCACTCTCAGTATTCAATGTGTCTTTCAACAACTTATCTGGATATTTTCCTTCCAACAGTGGATTGTTTAAATGCAGCAGTGCTGTTGGGAATCCATACCTAAGTCCCTGCCGCGGAGTGTCTCTGACTGTGCCATCAGGGAATCAGCCAGGGCCGATTGATAGCAACTCTTATAATTCGGAAACAGGGCAAGCTGCTGGCAAGAAGAGTGGGAGTGACTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACATTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATCGGGAGTGGAGGTTTTGGGGCAACATACAAGGCGGAGATAGCATCAGGAATCCTGGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCCGAGATCAAGACACTTGGGAGGCTTCATCATCCTAACCTTGTCACTCTGATTGGTTATCATGCTTGTGAAACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTCGAAAAGTTTATCCACGAGAGGTCCACGAGGGCTGTAGACTGGAGAATTCTTCACAAGATTGCATTGGACATTGCCCGCGCACTGGCTTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTGAAGCCCAGCAACATCTTGTTGGATGACGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACATCAGAGACACATGCTACCACTGGTGTAGCTGGAACATTTGGGTATGTTGCCCCTGAATATGCCATGACATGCCGTGTTTCTGATAAGGCTGACGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCTTTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGAAGGGCAAATGAGTTTTTCACTGCAGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGTACTGTTGATTCTCTCTCTACCAGACCTACAATGAAACAAGTTGTTAGAAGGCTCAAGCAGCTTCAACCTCCATCATGCTAG 3477 0.4521 MFSASSLTVSSSSSSSSSYSCSASPSSSSHCSSVIKGNSLMQFLLVVLVVLFTLQNGAFAIDSDKSALLRMKASLSDPAGVLSTWTTADGSHSGHCYWSGVLCDANSRVVAVNVTGNGASRTSHPCSDSSKFPLYGFGIRRTCKGSKGSLFGNVSSVGFDFISELTELRVLSLPFNALEGEIPEAIWGMENLEVLDLEGNLISGYLPLRINGLRKLRVLNLGFNRIIGEVPSSIASLESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPGSLGNCERLRTLLLYSNLLEEGIPGEFGKLKSLELLDVSRNTLSGSVPRELGNCSELSVLVLSNLFDVRGDAAGDFGKLGSVNDEVNYFXGSMPLEVFSLPNLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFLSGEFPNQLGVCKRLHFLDLSGNNLTGVLSEELHVPCMSVFDVSGNMLSGSVPDFSNIVCPPVPSWNGNLFEDGNVSSPYASFFLSMVHESSLFTSMGGIGTSVVHNFGQNSFTGIQSLPVPHDRLGKKNGYTFLVGGNILTGTFPTYLFEKCDTLDAFLLNASYNNISGHIPFNISRMCRSLKYLDVSGNQLAGPIPVDLGNVVSLVSLNLSRNQLQGQIPSSLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVFDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAHVPSLSVFNVSFNNLSGYFPSNSGLFKCSSAVGNPYLSPCRGVSLTVPSGNQPGPIDSNSYNSETGQAAGKKSGSDFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEIASGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIHERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGDDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC* 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0974 1158 SMART serkin_6 879 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0974 1158 ProSiteProfiles Protein kinase domain profile. 879 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0974 1158 SUPERFAMILY Protein kinase-like (PK-like) 861 1150 IPR011009 -
Vra1g0974 1158 CDD STKc_IRAK 885 1153 - -
Vra1g0974 1158 SMART LRR_typ_2 213 236 IPR003591 -
Vra1g0974 1158 SMART LRR_typ_2 689 712 IPR003591 -
Vra1g0974 1158 SMART LRR_typ_2 641 665 IPR003591 -
Vra1g0974 1158 SMART LRR_typ_2 237 259 IPR003591 -
Vra1g0974 1158 SMART LRR_typ_2 713 736 IPR003591 -
Vra1g0974 1158 SMART LRR_typ_2 285 307 IPR003591 -
Vra1g0974 1158 SMART LRR_typ_2 165 189 IPR003591 -
Vra1g0974 1158 SMART LRR_typ_2 331 355 IPR003591 -
Vra1g0974 1158 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 42 1157 - -
Vra1g0974 1158 Pfam Leucine Rich repeat 617 631 IPR001611 GO:0005515
Vra1g0974 1158 Gene3D Ribonuclease Inhibitor 372 506 IPR032675 -
Vra1g0974 1158 MobiDBLite consensus disorder prediction 783 803 - -
Vra1g0974 1158 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 42 1157 - -
Vra1g0974 1158 Pfam Leucine rich repeat 643 702 IPR001611 GO:0005515
Vra1g0974 1158 Gene3D Ribonuclease Inhibitor 261 367 IPR032675 -
Vra1g0974 1158 Gene3D Ribonuclease Inhibitor 527 773 IPR032675 -
Vra1g0974 1158 Gene3D Transferase(Phosphotransferase) domain 1 955 1155 - -
Vra1g0974 1158 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Vra1g0974 1158 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Vra1g0974 1158 Gene3D Phosphorylase Kinase; domain 1 842 954 - -
Vra1g0974 1158 Pfam Leucine rich repeat N-terminal domain 62 104 IPR013210 -
Vra1g0974 1158 Pfam Protein kinase domain 882 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0974 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672|GO:0006468
Vra1g0974 1158 SUPERFAMILY L domain-like 154 745 - -
Vra1g0974 1158 Gene3D Ribonuclease Inhibitor 60 260 IPR032675 -
Vra1g0974 1158 ProSitePatterns Protein kinases ATP-binding region signature. 885 907 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0974 Vra-Chr1 11601725 11605666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0974 62 1158 Receptor kinase-like Gene Family AT3G02130 64.018 0.0 1328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vra1g0974 Pkinase 9.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0974 - - vra:106772082 2201.79