Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0973 ATGTTTTCTTCTTCTTCTTCTTCTCATTGCAGTTCAGTGATCAAATGGAGTTCCCTAGTCAAGTTTCTCTTCTTCGTGGTTCTGTTCTTGTCGCCAAGCGACGCAGTATTGGCGGATTCGGACGAATCCGCTCTCCTTCGTCTGAAGGCATCGTTTTCCGACCCCGCCGGCGTTCTCTCCACATGGACCTCCGCAGCCGGCGCTGACTCTGGCTACTGCTCCTGGTCTGGTGTCCTCTGCAACGCAAACTCCCGGGTGGTCGCCGTCAACGTCACCGGAAACGGCGGCAACCGCCGCAACGGAACCTCCCACCCGTGCAAAGGTTTCTCTCAATTCCCTCTTTACGGATTCGGAGTTCGGCGAACGTGCGAAGGTAGTAAAGGTTCTCTCTTTGGAAACGTTTCTTCTTTTAATTTCATCAGTGTGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCTTGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATCTGATAAGTGGATATCTTCCGTTTAGAATTAACGGCTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTGTAGGGGAGATTCCTAGTTCAATTTCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTTCCTAGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGAAAGAGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGNGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGGGTATTCCTACTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTGTCCAGGAACACTCTTAGTGGTTCTGTGCCTGGAGAGCTTGGGAATTGCTTGGAGTTGTCAGTCCTTGTGCTGTCAAATCTCTTTGATCCACGCGGGGATGTCGCTGGTGATTTTGGGAAATTGGGTTCTGTGAATGATGAGCTGAACTATTTTGAAGGGTCGATACCTGTGGAGGTTTTATCGCTTCCAAAGCTGAAGATATTGTGGGCTCCCATGGTGAATTTGGAAGGCAGTTTTCAGGTAAGTTGGGGTCGTTGTCAGAGCTTAGAGATGGTTAATTTGGCTCAGAATTTTTTCAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCGAGAGACTGCATTTTCTTGATCTAAGTGGAAACAACCTTACCGGGGTTCTTTCTAGAGAACTTCGTGTTCCCTGTATGGGCATGTTTGATGTTAGCGGGAACATGTTATCTGGTTCAATTCCTGATTTCTCTGATATTGTATGCCCCCCTGAACCTTCTTGGAATGGCAACCTATTTGAAGATGGTAATGTTTCTCCACCATATGCATTCTTTTTTTTGTCAAAGGTTTGGGAGAATTCACTTTTCACAGCAATGGGGGGAGTTGGTATTTCGGTTGCTCACAACTTTGGTCGAAACAACTTCAATGGCATTCTGTCATTACCTGTGGCACGGGACAGGCTGGGGAAACAGAGCAGTTACACATTTCTGGTTGGTGAAAATAATCTTACTGAACCATTTCCTACGTATTTATTTGAGAAATGCCATGGGTTAGATGCATTGCTTCTAAATGTCAGTTATAATAGGATATCTGGTCATATTCCTTCCAGTCTCAGTGGGATGTGCAGATCATTGAAATTTTTGGATGCATCTGGAAATCAGCTTGCAGGACCAATTCCCGTTGATTTAGGGAATATGGTCTCCCTTGCATCGCTGAACCTCAGTAAGAATCAGTTAGAAGGTGAGATTCCCACCAACCTTGGCCAGATAAAGAATCTGAAGTTTCTTTCTTTGGCTGGTAATAAGTTAAATGGCTCGATTCCGACCAGCCTGGGGCAGTTGTACTCTTTGGAAATCTTGGACCTTTCTTCAAACTATCTTACTGGTGAGATTCCAAAGGCTATTGAGAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGGTGGTTTGGCATATGTCACCACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGATCATTGCCTTCTAATAGTGGCTTGATTAAATGTAGTAGTGCTGTTGGGAATCCGTTTCTAAGTCCCTGCCGTGGAATTTCTCTATCTGTGCCGTCAGGAAGTCAACTAGGGCCTATTTATGGCAGCCCTTATACTCCAGCAACTGAACAAGCCGCTGTCAAGGACAGTGGTAATGGCTTGAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTTTTTCCGTTCTTATAGCCCTGATTGTTCTATTTTTTTACACTCGGAAGTGGAAGCCTGGGTCCAGGGTTGTTGGTTCTACTAGAAAAGAAGTTACAGTGTTTACTGATATCGGGGTCCCGTTGACTTTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGCATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGGTAGCACCAGGAGTTTTGGTGGCAGTCAAACGACTTGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCGGAAACCAAGACCCTTGGGAGGCTTCATCATCCTAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTTGAAAAGTTCATCCAAGAGAGGTCCACAAGGGTTGTGGATTGGAGGATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTGGCTTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTGAAGCCTAGCAATATCTTGTTAGATGACGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACATCAGAGACACATGCTACCACTGGTGTAGCGGGAACATTTGGATATGTTGCCCCTGAATATGCCATGACTTGCCGTGTTTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCTTTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTATTGAAGCAAGGAAGGGCAAATGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGAGGATTTGGTAGAGGTTCTTCACTTGGCTATTGTCTGTACTGTTGACTCTCTCTCCACCAGACCTACAATGAAACAAGTTGTGAGAAGGCTCAAGCAGCTTCAACCCCCATCATGCTAG 3411 0.4535 MFSSSSSSHCSSVIKWSSLVKFLFFVVLFLSPSDAVLADSDESALLRLKASFSDPAGVLSTWTSAAGADSGYCSWSGVLCNANSRVVAVNVTGNGGNRRNGTSHPCKGFSQFPLYGFGVRRTCEGSKGSLFGNVSSFNFISVLTELRVLSLPFNALEGEIPEAIWGLEKLEVLDLEGNLISGYLPFRINGLRKLRVLNLGFNRIVGEIPSSISSLESLEVLNLAGNELNGSVPSFVGRLRGVYLSFNQFSGVVPKEIGENCWKLEHLDLSGNSLVQGIPXSLGNCERLRTLLLYSNLLEEGIPTELGKLKSLEVLDVSRNTLSGSVPGELGNCLELSVLVLSNLFDPRGDVAGDFGKLGSVNDELNYFEGSIPVEVLSLPKLKILWAPMVNLEGSFQVSWGRCQSLEMVNLAQNFFSGEFPNQLGVCERLHFLDLSGNNLTGVLSRELRVPCMGMFDVSGNMLSGSIPDFSDIVCPPEPSWNGNLFEDGNVSPPYAFFFLSKVWENSLFTAMGGVGISVAHNFGRNNFNGILSLPVARDRLGKQSSYTFLVGENNLTEPFPTYLFEKCHGLDALLLNVSYNRISGHIPSSLSGMCRSLKFLDASGNQLAGPIPVDLGNMVSLASLNLSKNQLEGEIPTNLGQIKNLKFLSLAGNKLNGSIPTSLGQLYSLEILDLSSNYLTGEIPKAIENMRNLTDVLLNNNNLSGHIPGGLAYVTTLSAFNVSFNNLSGSLPSNSGLIKCSSAVGNPFLSPCRGISLSVPSGSQLGPIYGSPYTPATEQAAVKDSGNGLSSIEIASITSASAIFSVLIALIVLFFYTRKWKPGSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEVAPGVLVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRVVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGEDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0973 1136 Gene3D Phosphorylase Kinase; domain 1 822 932 - -
Vra1g0973 1136 SUPERFAMILY Protein kinase-like (PK-like) 839 1128 IPR011009 -
Vra1g0973 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Vra1g0973 1136 Gene3D Ribonuclease Inhibitor 37 239 IPR032675 -
Vra1g0973 1136 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 1135 - -
Vra1g0973 1136 ProSiteProfiles Protein kinase domain profile. 857 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0973 1136 Gene3D Transferase(Phosphotransferase) domain 1 933 1133 - -
Vra1g0973 1136 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 20 1135 - -
Vra1g0973 1136 SUPERFAMILY L domain-like 307 470 - -
Vra1g0973 1136 Gene3D Ribonuclease Inhibitor 519 759 IPR032675 -
Vra1g0973 1136 Gene3D Ribonuclease Inhibitor 240 345 IPR032675 -
Vra1g0973 1136 Gene3D Ribonuclease Inhibitor 350 489 IPR032675 -
Vra1g0973 1136 Pfam Leucine Rich Repeat 193 215 IPR001611 GO:0005515
Vra1g0973 1136 Pfam Leucine Rich Repeat 669 691 IPR001611 GO:0005515
Vra1g0973 1136 Pfam Leucine Rich Repeat 263 285 IPR001611 GO:0005515
Vra1g0973 1136 SUPERFAMILY L domain-like 554 736 - -
Vra1g0973 1136 SUPERFAMILY L domain-like 40 344 - -
Vra1g0973 1136 SMART serkin_6 857 1135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0973 1136 PRINTS Leucine-rich repeat signature 430 443 - -
Vra1g0973 1136 PRINTS Leucine-rich repeat signature 667 680 - -
Vra1g0973 1136 Pfam Leucine rich repeat N-terminal domain 38 81 IPR013210 -
Vra1g0973 1136 Pfam Protein kinase domain 860 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0973 1136 SMART LRR_typ_2 143 167 IPR003591 -
Vra1g0973 1136 SMART LRR_typ_2 619 643 IPR003591 -
Vra1g0973 1136 SMART LRR_typ_2 667 691 IPR003591 -
Vra1g0973 1136 SMART LRR_typ_2 309 333 IPR003591 -
Vra1g0973 1136 SMART LRR_typ_2 263 285 IPR003591 -
Vra1g0973 1136 SMART LRR_typ_2 191 214 IPR003591 -
Vra1g0973 1136 SMART LRR_typ_2 215 239 IPR003591 -
Vra1g0973 1136 ProSitePatterns Protein kinases ATP-binding region signature. 863 885 IPR017441 GO:0005524
Vra1g0973 1136 CDD STKc_IRAK 863 1131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0973 Vra-Chr1 11590019 11593908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0973 35 1136 Receptor kinase-like Gene Family AT3G02130 62.633 0.0 1308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vra1g0973 Pkinase 6.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0973 - - vra:106772082 1874.75