Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0971 ATGATCAACAGTACAAAAGAAGCAGATTTTCCACTGAAACAGGAAGGTGTTTCTTCAAGTGATCATGAAAAGGCAAAGGCTTCATCGAGTTCATCTTCTCAATGGCTGAAACTGAAGGATCCAAGGATTGTTCGTGTGTCTCGAGCCTTTGGAGGAAAAGACAGGCACAGCAAAGTGTGCACAGTAAGAGGGCTAAGAGACAGAAGAGTGAGGCTTTCAGTGCCAACAGCAATTCATCTCTACGACCTTCAAGATAGGCTTGGACTGAATCAACCCAGCAAGGTTGTTGATTGGTTGCTGAATGCAGCAAAGCATGAAATTGATGAACTTCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCATCTCTTGTTGCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACAAACACTTTGTGGAAATCAAAGTCAGGAGAAATGGTTAGTGATAAAGCAAATTGGATAAACAGAAATGAAGAAGATAATAGTAATAATAATAACAATAATAATAACACTGCTGGTGATTGTGATAATAAACACTGTCATGGTGCACATGTTTTTTCAAATAATCTCTTGCCAAGACCAAACCATCCTTCATTTTTGGGGTTGATGAACACCATGCCATCACTTGGTTACCAATGGGAGCCTAATTCAGGTGAGGTTGCTCAATGGGCAAACCATGGATTTGTTAATCAAACAGATATACACAGCATTAATGTAGTTCCAATCCCCTCAACTTTGGCTCTATCAACTGGGAGTACTACTCCTCAAATTTTGGTATGTCCTTCTGGAGCAACACAGCCATATTTCCCTTCACATGTTGCAGCAATGGAGATGAATGCGAGACAGCTCAACCACTATCAGATGCTGACTTCAGCTTCTCAAAATCTCTTCGCAAATTCATCTCAGCAACTCATGAGCCAATCTGGGAAAGTGCCATTCAGCTTGGTTAGGCCTAAACTTTTCCATTCTCCTAACAGCAGTGAAAGTCATTCTCGTAAAGACCAGGATTTTCCTTCCAAGTGA 1050 0.4143 MINSTKEADFPLKQEGVSSSDHEKAKASSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVACNEVSTSREGSGQNTNTLWKSKSGEMVSDKANWINRNEEDNSNNNNNNNNTAGDCDNKHCHGAHVFSNNLLPRPNHPSFLGLMNTMPSLGYQWEPNSGEVAQWANHGFVNQTDIHSINVVPIPSTLALSTGSTTPQILVCPSGATQPYFPSHVAAMEMNARQLNHYQMLTSASQNLFANSSQQLMSQSGKVPFSLVRPKLFHSPNSSESHSRKDQDFPSK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0971 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 345 IPR005333 GO:0003700
Vra1g0971 349 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 1 345 - -
Vra1g0971 349 Pfam TCP family transcription factor 52 175 IPR017887 -
Vra1g0971 349 MobiDBLite consensus disorder prediction 335 349 - -
Vra1g0971 349 MobiDBLite consensus disorder prediction 1 33 - -
Vra1g0971 349 MobiDBLite consensus disorder prediction 328 349 - -
Vra1g0971 349 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0971 Vra-Chr1 11556366 11560476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0971 35 297 TCP Transcription Factor Family AT3G02150 42.960 2.09e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vra1g0971 TCP 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0971 - - aprc:113867214 503.056