Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0961 ATGACCATCTTCACTTTCACCTTCTTAAAACTCTTCTTCCTCCTCCTACTACACTTCTCCACACGCCTCCAAGCCTACATCTCAGAGGAAGTTTTCACCATCAATTGCGGCACCACCGGGAACTCCTCCGATGGTCAAAGAACCTGGACCGGTGACACAGACACAAAGTACTTATCTTCCCAAGATACTACCGTTTCAGACAAGGCGTCAACACAGTCTCCTTCAACCAATCAAGTCCCCTTCTCTACTGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCACCAAATTCCTTCGCCTCTTCTTCTACCCTGCTGACTACCCTTCCTTTCCCCGCAACCACGCTTCCTTCTCCGTTCAATCCAACCATTTTATTCTCCTCAACGATTTCAACGCCTCTCTTAACGCCGATGCTCAAGCCACGGACACTATCTTCAGGGAATACGTGGTCAACGTCAACGACGGTGAGAGGCTTATCCTCACCTTCATCCCCTCGCATCCAAACTCTTACGCTTTCATCAATGGAATCGAGGTACTTTCCATGCCAACCGATTTATATTACACACCAGCAAATGACACGGGCTTCACGACCGTCGGAACTAGCACCCTGTACAGTGTTGGAACCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAGCCGGGGGACAAGAAATCTCGCCATATAACGACAGCGGTTTGTTCAGGGATTGGGCTGCCGAAGAACCTTACTTTATCAAACGCAATCCAAAGAATGATGATCTACCAGCTGACGTGGATGGGAAAATGGACATAACCGTGAATCCCGATTACTTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAACATGGGCACAAACGCCACTCTGAACAAAATGAGCAACCTCACTTGGGAGTTCCCCGTTGATTATGGCTTCACTTACGTTCTCAGGCTCCACTTTTGCGAGCTTGATCCCAATATTAATAAAATTGGTGACAGAAAATTTCATATTTACATAACGAGTCAGGTGGCTGATGATCGTGCAGATGTAATGAAATGGAGTAATCAACAAAAGGGTCTAGCTGTGCATAGAAACTACGCCGTTTTTATTCCTGAGAATGGTGCTCAGAAAAAGTTTAATCTCTCCCTTCAAATGCACCCTTACGAAAGCGGTGTGGATACGAAATACAGTGACGCCTTCCTGAACGGTCTCGAGATCTTCAAAATCAGTGAAGCTGGCTCAAACAACCTAGCCGGACCCAACCCGGACCCGGTTCAGACTCCGCAGACCAACATTCCCGGTCAAAACGGAAAGACCAGAAGCGGAAGCTCAACGACGATTATTGGCGCCATAGCAGGGGTGGTGTCAGGAATCGTTTTGATCTCGCTAATAGTTTTCCTTGTCGTGTTTTTCAGACGCAAGAGAACCACAAAGCCAAAAGATTACAACAAGTCAAAGTCTTCTGCGACTTCCAAATGGGGTCCACTCTCCTTTACAACGACCAAGTCAACCACTACGAACTCCTCTCTACCGTCCGATCTCTGCCGCCACTTCTCCCTGACGGAGATCAGAGCCGCCACCAATAACTTCGACGACGTTTTCATCGTCGGCGCCGGGGGATTTGGCCATGTGTATAAGGGCTACATCGATGGGGGTTCCACCCCAGTGGCCATCAAGCGACTCAAACCGGGTTCACAGCAGGGTGCGCACGAGTTCATGAACGAGATCGAGATGCTCTCGCAGCTCCGCCATCTTCATCTCGTGTCCCTAATCGGATACTGCAACGAAATGAACGAGATGATCCTCATCTACGACTTCATGGCACGTGGCACCCTACGCGACCATCTCTACAACACGGACAACCCCGCTATCCCGTGGAAGGAGCGCCTGAAGATCTGCATCGGCGCCGCGCGTGGGCTGCACTATCTCCACACTGGCGCGAAGCACACGATCATCCACCGCGACGTGAAAACCACGAACATCTTGTTGGATGATAAGTGGGTAGCCAAGGTTTCGGACTTCGGGCTTTCTCGAATTGGACCCACGGGCATGTCAAAGGCCCATGTGAGCACTGTAGTGAAGGGGAGCATAGGGTATTTAGACCCAGAGTATTACAAACGACAGCAATTGACGGAAAAGTCTGACGTGTACTCTTTCGGCGTCGTTTTATTTGAATTACTCTGCGCTCGTCCGCCTCTGATCCGCACGGCGGAGAAAAAACAGGTGTCACTGGCTGATTGGGCGAGACACTGTTACCAAAATGGGACAATTGCGCAGATTGTTGACCCGACATTGAAGGGGAGGATCGCACCAGAGTGCTTGAGGAAGTTCTGCGAGATTGGGGTGAGTTGTTTGTTGGACGATGGAACGCAGAGGCCGTCGATGAACGACGTCGTTTGGATGCTGGAGTTTGCGTTGCAGTTACAAGAGAGTGCGGAACAGCGCGATAATGCTAACGTGATTGGTGGTGAAGGGGATAATGAAAGAAGGGAGGAAGGTATGGAAGATTTGTTCAGTAGTGGAACGAGTGTGGGTCAGGTTTCGGATTTTAACAAGAGTAGTGGAAGTGTGGTGAGTGTGAGTACCAGCAGCGAAGAGCTTAGTAGCAGCTATAAAGAGAGTGATAGATTAGTGTCTGGGACTGTTTTCTCTGAAATTGTTGACCCAAAGCCACGTTGA 2676 0.4955 MTIFTFTFLKLFFLLLLHFSTRLQAYISEEVFTINCGTTGNSSDGQRTWTGDTDTKYLSSQDTTVSDKASTQSPSTNQVPFSTARLSRSQFNYSFPVSPGTKFLRLFFYPADYPSFPRNHASFSVQSNHFILLNDFNASLNADAQATDTIFREYVVNVNDGERLILTFIPSHPNSYAFINGIEVLSMPTDLYYTPANDTGFTTVGTSTLYSVGTSFALQTEYRIKAGGQEISPYNDSGLFRDWAAEEPYFIKRNPKNDDLPADVDGKMDITVNPDYLAPKELFRTARNMGTNATLNKMSNLTWEFPVDYGFTYVLRLHFCELDPNINKIGDRKFHIYITSQVADDRADVMKWSNQQKGLAVHRNYAVFIPENGAQKKFNLSLQMHPYESGVDTKYSDAFLNGLEIFKISEAGSNNLAGPNPDPVQTPQTNIPGQNGKTRSGSSTTIIGAIAGVVSGIVLISLIVFLVVFFRRKRTTKPKDYNKSKSSATSKWGPLSFTTTKSTTTNSSLPSDLCRHFSLTEIRAATNNFDDVFIVGAGGFGHVYKGYIDGGSTPVAIKRLKPGSQQGAHEFMNEIEMLSQLRHLHLVSLIGYCNEMNEMILIYDFMARGTLRDHLYNTDNPAIPWKERLKICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPTGMSKAHVSTVVKGSIGYLDPEYYKRQQLTEKSDVYSFGVVLFELLCARPPLIRTAEKKQVSLADWARHCYQNGTIAQIVDPTLKGRIAPECLRKFCEIGVSCLLDDGTQRPSMNDVVWMLEFALQLQESAEQRDNANVIGGEGDNERREEGMEDLFSSGTSVGQVSDFNKSSGSVVSVSTSSEELSSSYKESDRLVSGTVFSEIVDPKPR* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0961 891 SMART serkin_6 529 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0961 891 Gene3D Phosphorylase Kinase; domain 1 493 605 - -
Vra1g0961 891 PANTHER OS07G0166700 PROTEIN 17 827 IPR045272 GO:0004714|GO:0006468
Vra1g0961 891 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 17 827 - -
Vra1g0961 891 MobiDBLite consensus disorder prediction 482 507 - -
Vra1g0961 891 ProSiteProfiles Protein kinase domain profile. 529 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0961 891 ProSitePatterns Protein kinases ATP-binding region signature. 535 558 IPR017441 GO:0005524
Vra1g0961 891 MobiDBLite consensus disorder prediction 416 441 - -
Vra1g0961 891 MobiDBLite consensus disorder prediction 478 507 - -
Vra1g0961 891 SUPERFAMILY Protein kinase-like (PK-like) 504 804 IPR011009 -
Vra1g0961 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Vra1g0961 891 Pfam Malectin-like domain 34 408 IPR024788 -
Vra1g0961 891 PIRSF TyrPK_CSF1-R 532 623 - -
Vra1g0961 891 PIRSF TyrPK_CSF1-R 17 88 - -
Vra1g0961 891 PIRSF TyrPK_CSF1-R 429 476 - -
Vra1g0961 891 PIRSF TyrPK_CSF1-R 769 878 - -
Vra1g0961 891 PIRSF TyrPK_CSF1-R 612 728 - -
Vra1g0961 891 MobiDBLite consensus disorder prediction 838 856 - -
Vra1g0961 891 Pfam Protein tyrosine and serine/threonine kinase 535 799 IPR001245 GO:0004672|GO:0006468
Vra1g0961 891 Gene3D - 27 188 - -
Vra1g0961 891 Gene3D - 217 409 - -
Vra1g0961 891 CDD STKc_IRAK 535 802 - -
Vra1g0961 891 Gene3D Transferase(Phosphotransferase) domain 1 606 826 - -
Vra1g0961 891 MobiDBLite consensus disorder prediction 836 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0961 Vra-Chr1 11393240 11396671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0961 26 891 Receptor kinase-like Gene Family AT3G51550 50.503 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra1g0961 Malectin_like 1.7e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0961 - - gsj:114381619 1373.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0961 1 11393240 11396671 Vra1g0961 1 11393240 11396671 ECH