Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0957 ATGAGGTTCAACGGTGTGACCCCCTTCAAATTCTTCCTCCACCTCTTTACACTCTTTACGCACCTCCAAGCTTACACCACAGTTAACCATTTCACAATCAGTTGCGGCACCACCGGAACATCCTACGACGGTGGAAGAACATGGACAGGGGACACAGGTTCGGTGTTCTTCTCTAATCAAGACAACACCGTTTCCGCTAACCCAACAACACCACAACCTAATTCCACCCTTCAAGTACCCTACAACACGGCACGTCTGTCTCGTTCCCAGTTCAATTATTCCTTCCCTGTAACCCCAGGCTCCTATTTCCTTCGCCTCTTCTTCTACCCAGCTTCTTACCCTTCCTTTTCCCGTACACAAGCATCCTTCACCGTTCATTGCAACCACTTCACTCTCTACAGTTTCAACGCCGACGAAGAAGACTCGGAAACCGTCTTCAGAGAGTACGTGGTCAACGTTCACAACAGTGAGACGCTCAACCTCAGCTTCACTCCCTCACAACCTAACTCCCACGCTCTCATCAACGGAATCGAGGTATTTTCCATCCCAAACGATCTCTATTACAGAACAGCGTGTATCACGAAGAGATCACCTAAGTTGACTTGGGACTTCCCCGTTGACTCTGGCTTCTACTACTTGGTTAGCCTCCATTTTTGTAAACTTCACCAGAACATTACTAACATCGCTGACAGGGTGTTCTGCATTTACATAGGGAGCGACCTGGCTGAGGATCACGCTGAGGTTATGAGATGGAGCAACCAAGGTAAAGGTCTCGCTGTGCAGACAAATTTCGTCCTTTTGATTCCCAAAAAGGATACTCAGGAAAAGGTTAGTCTCTCGCTCCAATTGCATCCTTATTTGAATTCGAGCAATCCGTGCTTGAACGGTGTCGAGATCTTCAAAATCAGCGACTCCGACAACCTCGCCAGACCGAACGTGCAGAACGGTCTTGCGTCGGAAAGAGAAGGAAGGTCTTATCAATCTTAAACGAAGAATTACACCACAAAAAAGAAAATTATCATAGCAGGGGTGGTATTCGTCTTGGTCTCGTTTGTTGGTTTCGCCGTCGTTTGGTGCGTTTTATCCAAGTTCAATTTACGCTCGTTCTCAACCAATGTATACCAACTGCCAACCAATGCACACGAACTGTCAACCAACACGCTCATCTGCCGGCGCTTATCCCTCGTCGAGATCAAAGCCGCCACCAACAACTTTGACGACGCTGCCGTCGTCGGCGTCGGGGGATTTGGCCTCGTGTACAGGGGCATCATCCGCAGAATTTTCATGCCGGTGGCACTTAAGCACTTCAGACCGGGTTCAAATGGTCCTAAAAAGTTCCTCAACGAGATGGAGGTGGCTATCAAGCGCCACAAACCGGGTTCAAAGCAGGGCGCCGAAGAGTTTCTGAACGAGATCGAGTTGCTCTCGCAGCTCCGCCATCGCAATCTCGTTCCACTCATCGGTTACTGCAACAGCAAGGAGGAGCTGATCCTGGTCTATAGTTTTATGGCACGTGGCAACCTCCGCGACCATCTCTACAACAGCGACAAACCTCCGTTGCCATGGAAGCGACGCTTGCAGATTTGTATCGACGCAGCGCAGGCGCTTCATTATCTCCACTGTTGCGCCAAAACATACACGATCATCCACAGTGACGTGAAAACCACGAACATCTTGTTGGATGACGAGTGGGTGGCCAAGGTATCGGACCTTGGACTTTCCAGAATTGGAGCCATAGTTGAGTCCAAGGCTCATGTCTGCGACACCGCCATGAAGGGTAGCTTTGGGTATATAGATCCAGAATATTATAAACGACAATATTTGACGGGAAAGTCTGACGTGTATTCTTTCGGGGTAGTGTTGTTTGAGGTACTTTGCGCTCGTCCGCCTCTGATCCGCACCGCGGAGCCGATACAAGAGTCGCTTTGTAATTGGGTTAGGTACTGCTATCAAAAAGGGACCATGGCACAGATATTGGACCCCAGCTTGAATGGGAAGATCGCGCCCAAATGCTTTAGAATGTTTTGCAAGATTGGGGTGAGTTGTTTGTCGGAAATTGGGACGCTTAGACCGTCCATGAATGATGTGGTTGGGCAGCTTAAATATGCTCTGCAACTACAAGAAATTGCAGATATTAACGAGGCGCATTCTAATACCAAAAGCCCATTGTCTGGTTAG 2178 0.4881 MRFNGVTPFKFFLHLFTLFTHLQAYTTVNHFTISCGTTGTSYDGGRTWTGDTGSVFFSNQDNTVSANPTTPQPNSTLQVPYNTARLSRSQFNYSFPVTPGSYFLRLFFYPASYPSFSRTQASFTVHCNHFTLYSFNADEEDSETVFREYVVNVHNSETLNLSFTPSQPNSHALINGIEVFSIPNDLYYRTACITKRSPKLTWDFPVDSGFYYLVSLHFCKLHQNITNIADRVFCIYIGSDLAEDHAEVMRWSNQGKGLAVQTNFVLLIPKKDTQEKVSLSLQLHPYLNSSNPCLNGVEIFKISDSDNLARPNVQNGLASEREGRSYQS*TKNYTTKKKIIIAGVVFVLVSFVGFAVVWCVLSKFNLRSFSTNVYQLPTNAHELSTNTLICRRLSLVEIKAATNNFDDAAVVGVGGFGLVYRGIIRRIFMPVALKHFRPGSNGPKKFLNEMEVAIKRHKPGSKQGAEEFLNEIELLSQLRHRNLVPLIGYCNSKEELILVYSFMARGNLRDHLYNSDKPPLPWKRRLQICIDAAQALHYLHCCAKTYTIIHSDVKTTNILLDDEWVAKVSDLGLSRIGAIVESKAHVCDTAMKGSFGYIDPEYYKRQYLTGKSDVYSFGVVLFEVLCARPPLIRTAEPIQESLCNWVRYCYQKGTMAQILDPSLNGKIAPKCFRMFCKIGVSCLSEIGTLRPSMNDVVGQLKYALQLQEIADINEAHSNTKSPLSG* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0957 724 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 195 717 - -
Vra1g0957 724 Gene3D Phosphorylase Kinase; domain 1 368 501 - -
Vra1g0957 724 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vra1g0957 724 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 30 188 - -
Vra1g0957 724 SUPERFAMILY Protein kinase-like (PK-like) 389 697 IPR011009 -
Vra1g0957 724 ProSitePatterns Protein kinases ATP-binding region signature. 410 433 IPR017441 GO:0005524
Vra1g0957 724 PANTHER OS07G0166700 PROTEIN 30 188 IPR045272 GO:0004714|GO:0006468
Vra1g0957 724 PANTHER OS07G0166700 PROTEIN 195 717 IPR045272 GO:0004714|GO:0006468
Vra1g0957 724 SMART serkin_6 404 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0957 724 Gene3D - 29 183 - -
Vra1g0957 724 Gene3D - 184 303 - -
Vra1g0957 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Vra1g0957 724 Gene3D Transferase(Phosphotransferase) domain 1 502 720 - -
Vra1g0957 724 Pfam Protein tyrosine and serine/threonine kinase 409 698 IPR001245 GO:0004672|GO:0006468
Vra1g0957 724 Pfam Malectin-like domain 33 189 IPR024788 -
Vra1g0957 724 ProSiteProfiles Protein kinase domain profile. 404 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0957 Vra-Chr1 11372451 11374930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0957 200 712 Receptor kinase-like Gene Family AT3G51550 45.872 4.53e-142 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra1g0957 PK_Tyr_Ser-Thr 6.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0957 - - var:108345831 1339.71