Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0956 ATGGGCAGGAGGGTATTCTTCTCGTTCTCGTTTCCTTGTTTCGTCTTTGTTGTGCGGGCAAGATCCAAGTCCAATCCATGGACACTAAAGCTGCCAACCAACACGCTCATCCGGCGCTTCTCCATCGTCACGATCAAAGCCGCCACCAACAACTTCGACGACGCTTCCGTCGTCGGCTTCGGGGGATTCGGCTACGTGTACAGGGGCTTAATCCGCGGAATTTTCATCCCAATGGCTCATAAGCACTTAATACAGGGTTCCAACGGCGCTGAAAAGTTCTCAAAGGTGGCTATCAAGCGCCACAAACCGGGTTCAAAGCAGGGCGCTGAAGAGTTTCTGAACGAGATCAAAATGCTCTCGCAGCTCCGCCATCGCAATCTCGTTCGACTCATCGGTTACTGCAAAACCAAGAAGGAGATGATCCTGGTCTACAATTTCATGGCACGTGGCAACCTCCGTGACCATCTCTACAACAGCGACAAACCTTCATTGCCATGGAAGCGACGCTTGCAGATCTGTATCGACGTTGCGCACGCGCTGCATTATCTTCACTGCTGCGCCAATAAATACTCGATAATCCACAGCGATGTGAAAACCACGAACATCTTGTTGGACGAGGAGTGGGTGGCCAAGGTATCGGACTTTGGGCTTTCCAAAATTGGGCCCATGGGCGAGTCCAAGGTGAATGTCTGCGCCACCGCTGTGAAGGGTAGCTTTGGATATATAGATCCAGAATATCATAAACGACAACATTTGACGGAAAAGTCTGACGTGTACTCTTTCGGGGTAGTGTTATTCGAGGTACTGTGCGCTCGCCCGCCTCTCATTCGCACGGCGGATCCGAGACAAGAATCACTTGGTAATTGGGTTAGGTACTGTTACCAAAATGAAACCATGGCAGAGATAATGGACCCCACGTTGAGTGGAAAGATTGCGCCCAATTGCTTTAGAATGTTTTGCGATACCGGAGTGAGTTGTTTATCAGAAATTGGGACGCAGAGACCGTCTATGAACGACGTCGTTCAGATGCTAGGGTATGCCCTACAACTACAAGAAAAGGCAGAAATTAGTGTGGCGCATTCTAGCGGCAAAATTTCATTATCTAGTTAG 1110 0.4955 MGRRVFFSFSFPCFVFVVRARSKSNPWTLKLPTNTLIRRFSIVTIKAATNNFDDASVVGFGGFGYVYRGLIRGIFIPMAHKHLIQGSNGAEKFSKVAIKRHKPGSKQGAEEFLNEIKMLSQLRHRNLVRLIGYCKTKKEMILVYNFMARGNLRDHLYNSDKPSLPWKRRLQICIDVAHALHYLHCCANKYSIIHSDVKTTNILLDEEWVAKVSDFGLSKIGPMGESKVNVCATAVKGSFGYIDPEYHKRQHLTEKSDVYSFGVVLFEVLCARPPLIRTADPRQESLGNWVRYCYQNETMAEIMDPTLSGKIAPNCFRMFCDTGVSCLSEIGTQRPSMNDVVQMLGYALQLQEKAEISVAHSSGKISLSS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0956 369 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 29 357 - -
Vra1g0956 369 Pfam Protein tyrosine and serine/threonine kinase 57 344 IPR001245 GO:0004672|GO:0006468
Vra1g0956 369 PANTHER OS07G0166700 PROTEIN 29 357 IPR045272 GO:0004714|GO:0006468
Vra1g0956 369 Gene3D Transferase(Phosphotransferase) domain 1 147 365 - -
Vra1g0956 369 Gene3D Phosphorylase Kinase; domain 1 16 146 - -
Vra1g0956 369 SMART serkin_6 52 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0956 369 SUPERFAMILY Protein kinase-like (PK-like) 27 344 IPR011009 -
Vra1g0956 369 ProSiteProfiles Protein kinase domain profile. 52 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0956 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0956 Vra-Chr1 11367009 11368680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0956 31 355 Receptor kinase-like Gene Family AT3G51550 57.846 2.07e-121 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra1g0956 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0956 - - vun:114181146 583.948